Web site links:

http://www.affymetrix.com/support/technical/technotesmain.affx

This site includes links to technical questions and support when using Affymetrix GeneChip arrays.

 

http://www.affymetrix.com/support/technical/tutorial/analysis_center/index.affx

This site gives a tutorial on how to use Affymetrix NetAffx Analysis Center, which is a comprehensive resource designed to help one obtain structural and functional annotations for probe sets found on the Affymetrix GeneChip arrays.  Also included is in depth annotation information for each probe set includeing sequences represented in each set.

 

http://www.axon.com/gn_GenePixSoftware.html

This site gives a brief overview of the Axon GenePix Pro 5.0 software imaging analysis for custom spotted microarrays.

 

http://www.chem.agilent.com/cfusion/faq/faq.cfm?subsection=37&section=5

This site gives information about running RNA assays on the Agilent Bioanalyzer 2100.

 

http://genome-www5.stanford.edu/

This site is for the Stanford Microarray Database which contains published data, software and tools, useful microarray links and their annotation database.

 

http://mgm.duke.edu/genome/dna_micro/core/protocols.htm

This site contains protocols used for making probes for affymetrix and spotted arrays at Duke.

 

http://www.broad.mit.edu/cancer/

This site contains the Whitehead Institutes Cancer Genomics program information on genomic and computational solutions to problems in cancer biology and cancer medicine.  Publications and data sets of microarray data are included at this site.

 

http://pga.tigr.org/tigr-scripts/magic/r1.pl

This site contains the TIGR Resourcer 8.0 web site that provides annotation based on the TIGR Gene Indices (TGI) for commonly available microarray resources.

 

https://dig.cgt.duke.edu/

The Duke Integrated Genomics (DIG) database has been developed to provide annotation of genes identified in various types of biological experiments, including the analysis of DNA microarray data. The database integrates various gene annotation sources including UniGene, LocusLink, GeneCards, OMIM, and Homologene. A key feature is the ability to perform batch searches of these sources of information to generate a series of associated links to these sources of annotation for a collection of genes. An additional source of information is the functional annotation retrieved from the variety of experiments carried out in the Duke DNA microarray facility.

 

http://www.ebi.ac.uk/arrayexpress/Standards/

This site has information about data standards for Microarray data.