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Gene set: NFKB_DOWN_HINATA (C2:PERT:0006)
Standard nameNFKB_DOWN_HINATA
Systematic nameC2:PERT:0006
Brief descriptionGenes downregulated by NF-kappa B
CategoryC2: Curated
Sub-categoryPERT: Experimental pertuberation
Full description or Abstract
NF-kappa B regulates normal and pathological processes, including
neoplasia, in a tissue-context-dependent manner. In skin, NF-kappa
B is implicated in epidermal homeostasis as well as in the pathogenesis
of squamous cell carcinoma; however, its function in the underlying
mesenchymal dermis has been unclear. To gain insight into NF-kappa
B roles in these two adjacent cutaneous tissue compartments, NF-kappa
B effects on expression of 12 435 genes were determined in epidermal
keratinocytes and dermal fibroblasts. Although NF-kappa B induced
proinflammatory and antiapoptotic genes in both settings, it exhibited
divergent effects on growth regulatory genes. In keratinocytes,
but not in fibroblasts, NF-kappa B induced p21(CIP1), which was
sufficient to inhibit growth of both cell types. Levels of growth
inhibitory factor (GIF), in contrast, were increased by NF-kappa
B in both settings but inhibited growth only in keratinocytes.
These findings indicate that transcription factors such as NF-kappa
B can program tissue-selective effects via both differential target
gene induction as well as by inducing common targets that exert
differing effects depending on cellular lineage. 
Publication URL12673201
External linksna
Keywords & MeSH headingsEpithelial Cells/metabolism,Organ Specificity,Inflammation/genetics,Keratinocytes,Gene Expression Profiling,Comparative Study,I-kappa B/genetics/physiology,Transcription,Cyclins/biosynthesis/genetics,Cell Lineage,Human,Skin,Recombinant Fusion Proteins/physiology,Fibroblasts,genetics,Gene Expression Regulation,Mesoderm/cytology/metabolism,Genetic,cytology,physiology,Cell Division/drug effects,NF-kappa B,Nerve Tissue Proteins/biosynthesis/genetics,metabolism
OrganismHuman
Contributed byBroad Institute
Source platformHG_U95Av2
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Genes

21 genes, 21 accessions (Toggle view)

AccessionGeneTitleLinks
HYAL1
DUSP4
RIMS2
C4BPA
DAPK1
RAI3
KLK6
RUNX1
PPL
UPK1B
SULT2B1
THBS1
DSG3
INA
SCEL
KLK7
CEACAM6
KIAA0350
PTHLH
RGS2
ZNF185


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