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Gene set: NFKB_UP_HINATA (C2:PERT:0005)
Standard nameNFKB_UP_HINATA
Systematic nameC2:PERT:0005
Brief descriptionGenes upregulated by NF-kappa B
CategoryC2: Curated
Sub-categoryPERT: Experimental pertuberation
Full description or Abstract
NF-kappa B regulates normal and pathological processes, including
neoplasia, in a tissue-context-dependent manner. In skin, NF-kappa
B is implicated in epidermal homeostasis as well as in the pathogenesis
of squamous cell carcinoma; however, its function in the underlying
mesenchymal dermis has been unclear. To gain insight into NF-kappa
B roles in these two adjacent cutaneous tissue compartments, NF-kappa
B effects on expression of 12 435 genes were determined in epidermal
keratinocytes and dermal fibroblasts. Although NF-kappa B induced
proinflammatory and antiapoptotic genes in both settings, it exhibited
divergent effects on growth regulatory genes. In keratinocytes,
but not in fibroblasts, NF-kappa B induced p21(CIP1), which was
sufficient to inhibit growth of both cell types. Levels of growth
inhibitory factor (GIF), in contrast, were increased by NF-kappa
B in both settings but inhibited growth only in keratinocytes.
These findings indicate that transcription factors such as NF-kappa
B can program tissue-selective effects via both differential target
gene induction as well as by inducing common targets that exert
differing effects depending on cellular lineage. 
Publication URL12673201
External linksna
Keywords & MeSH headingsEpithelial Cells/metabolism,Organ Specificity,Inflammation/genetics,Keratinocytes,Gene Expression Profiling,Comparative Study,I-kappa B/genetics/physiology,Transcription,Cyclins/biosynthesis/genetics,Cell Lineage,Human,Skin,Recombinant Fusion Proteins/physiology,Fibroblasts,genetics,Gene Expression Regulation,Mesoderm/cytology/metabolism,Genetic,cytology,physiology,Cell Division/drug effects,NF-kappa B,Nerve Tissue Proteins/biosynthesis/genetics,metabolism
OrganismHuman
Contributed byBroad Institute
Source platformHG_U95Av2
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Genes

111 genes, 111 accessions (Toggle view)

AccessionGeneTitleLinks
SPRR1B
WNT5A
MAP1B
RELA
ABCC1
CTSE
SOD1
CCL2
CXCL5
CFLAR
TNF
IL1B
PLAU
SOD2
FGF5
MSC
RABEP1
RAC2
STAT5A
IRF1
ARHGDIB
RAC1
GCH1
GADD45A
CXCL10
IFNAR2
IL7R
GTF2H4
CDH2
BTN3A3
CXCL11
KRT14
GPR37
GABBR1
SLC7A2
KRT10
PMSCL1
IL8
MAPK9
PTX3
TIAM1
SERPINB2
ICAM1
TAP1
CCNB1
IL6
CXCL6
ESM1
ADAMTS3
FN1
MMP9
EDN1
CYP27B1
ITGB6
MYBL1
SPTBN1
EFNA1
SERPINE1
SELE
ETS1
CDH3
TNC
BCL2A1
XPC
OLR1
SAA1
TNFAIP2
NPR1
IL1RN
PNRC1
GBP1
RARRES1
RELB
SEC24A
MMP14
WFDC2
KRT6B
IER3
NK4
CXCL3
BMP2
IL15
IL1A
PLAT
CSF2
FGF2
TNFAIP6
CD83
MMP1
ARHE
KIAA0608
HGFAC
ARF6
NFKB2
CXCL1
UTX
TNIP1
KRT7
ERCC1
RPA2
CXCL2
MAP2K3
CCL5
AP2B1
CPNE5
CD9
NFKB1
LITAF
CCL20
CDKN1A
TAF15


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