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Gene set: UEDA_MOUSE_LIVER (C2:PERT:0053)
Standard nameUEDA_MOUSE_LIVER
Systematic nameC2:PERT:0053
Brief descriptionGenes identified as time indicators in mouse liver.
CategoryC2: Curated
Sub-categoryPERT: Experimental pertuberation
Full description or Abstract
Detection of individual body time (BT) via a single-time-point
assay has been a longstanding unfulfilled dream in medicine, because
BT information can be exploited to maximize potency and minimize
toxicity during drug administration and thus will enable highly
optimized medication. To achieve this dream, we created a "molecular
timetable" composed of >100 "time-indicating genes," whose gene
expression levels can represent internal BT. Here we describe
a robust method called the "molecular-timetable method" for BT
detection from a single-time-point expression profile. The power
of this method is demonstrated by the sensitive and accurate detection
of BT and the sensitive diagnosis of rhythm disorders. These results
demonstrate the feasibility of BT detection based on single-time-point
sampling, suggest the potential for expression-based diagnosis
of rhythm disorders, and may translate functional genomics into
chronotherapy and personalized medicine. 
Publication URL15273285
External linksna
Keywords & MeSH headingsGenomics,Sensitivity and Specificity,Male,Oligonucleotide Array Sequence Analysis,Circadian Rhythm,Inbred BALB C,genetics,Mice,standards,methods,diagnosis,Reproducibility of Results,Chronobiology Disorders
OrganismMouse
Contributed byKate Stafford
Source platformMG_U74Av2
Downloadgrp|xml|map
Genes

166 genes, 174 accessions (Toggle view)

AccessionGeneTitleLinks
98447_atCEBPACCAAT/enhancer binding protein (C/EBP), alphaSource|GeneCards
95282_atHSPCA /// LOC544800antation 86 kDa antigen) (TSTA)Source|GeneCards
99521_atAK3L1adenylate kinase 3 alpha-like 1Source|GeneCards
95031_at1110059H15RIKRIKEN cDNA 1110059H15 geneSource|GeneCards
93290_atPNPpurine-nucleoside phosphorylaseSource|GeneCards
103335_atLGALS9lectin, galactose binding, soluble 9Source|GeneCards
93496_atELOVL5ELOVL family member 5, elongation of long chain fatty acids (yeast)Source|GeneCards
98572_atDNAJB11DnaJ (Hsp40) homolog, subfamily B, member 11Source|GeneCards
101995_atSQSTM1sequestosome 1Source|GeneCards
98038_atHMGB3high mobility group box 3Source|GeneCards
104116_atD5ERTD593EDNA segment, Chr 5, ERATO Doi 593, expressedSource|GeneCards
97473_atTSPAN4tetraspanin 4Source|GeneCards
95661_atCD9CD9 antigenSource|GeneCards
96041_atRBM3RNA binding motif protein 3Source|GeneCards
94288_atHIST1H1Chistone 1, H1cSource|GeneCards
92821_atUSP2ubiquitin specific protease 2Source|GeneCards
101928_atSERPINF2serine (or cysteine) proteinase inhibitor, clade F, member 2Source|GeneCards
103888_atRBPMSRNA binding protein gene with multiple splicingSource|GeneCards
98114_atNPC1Niemann Pick type C1Source|GeneCards
103006_atATF5activating transcription factor 5Source|GeneCards
93320_atCPT1Acarnitine palmitoyltransferase 1a, liverSource|GeneCards
104285_atHMGCR3-hydroxy-3-methylglutaryl-Coenzyme A reductaseSource|GeneCards
95729_atAPOA5apolipoprotein A-VSource|GeneCards
93694_atPER2period homolog 2 (Drosophila)Source|GeneCards
102233_at4833442J19RIKRIKEN cDNA 4833442J19 geneSource|GeneCards
104451_atSLC11A2solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2Source|GeneCards
92925_atCEBPBCCAAT/enhancer binding protein (C/EBP), betaSource|GeneCards
97224_atPNRC1proline-rich nuclear receptor coactivator 1Source|GeneCards
98923_atRCL1RNA terminal phosphate cyclase-like 1Source|GeneCards
95733_atSLC29A1solute carrier family 29 (nucleoside transporters), member 1Source|GeneCards
103619_at1810044O22RIKRIKEN cDNA 1810044O22 geneSource|GeneCards
103473_atPAK4p21 (CDKN1A)-activated kinase 4Source|GeneCards
102955_atNFIL3nuclear factor, interleukin 3, regulatedSource|GeneCards
100494_atFGF1fibroblast growth factor 1Source|GeneCards
103200_at6330500D04RIKRIKEN cDNA 6330500D04 geneSource|GeneCards
100958_atSPATA13spermatogenesis associated 13Source|GeneCards
99638_atCOL18A1procollagen, type XVIII, alpha 1Source|GeneCards
102797_atDHRS3dehydrogenase/reductase (SDR family) member 3Source|GeneCards
95054_atTARSthreonyl-tRNA synthetaseSource|GeneCards
92532_atAVPR1Aarginine vasopressin receptor 1ASource|GeneCards
102847_s_atCYP2A4 /// CYP2A5cytochrome P450, family 2, subfamily a, polypeptide 4 /// cytochrome P450, family 2, subfamily a, polypeptide 5Source|GeneCards
96607_at1500003O03RIKRIKEN cDNA 1500003O03 geneSource|GeneCards
103553_atMCM10minichromosome maintenance deficient 10 (S. cerevisiae)Source|GeneCards
96806_atLPIN2lipin 2Source|GeneCards
92809_r_atFKBP4FK506 binding protein 4Source|GeneCards
104343_f_atPLA2G12Aphospholipase A2, group XIIASource|GeneCards
94896_atHNRPABheterogeneous nuclear ribonucleoprotein A/BSource|GeneCards
94795_atHSD3B5hydroxysteroid dehydrogenase-5, delta<5>-3-betaSource|GeneCards
94261_atTHRAP3thyroid hormone receptor associated protein 3Source|GeneCards
103078_atBC014685cDNA sequence BC014685Source|GeneCards
100877_at1810058I24RIKRIKEN cDNA 1810058I24 geneSource|GeneCards
92808_f_atFKBP4FK506 binding protein 4Source|GeneCards
93104_atBTG1B-cell translocation gene 1, anti-proliferativeSource|GeneCards
93315_atMAP2K3mitogen activated protein kinase kinase 3Source|GeneCards
104745_atARL6IP2ADP-ribosylation factor-like 6 interacting protein 2Source|GeneCards
96564_atHSPA8 /// LOC432432heat shock protein 8 /// similar to heat shock protein 8 /// similar to Heat shock cognate 71 kDa proteinSource|GeneCards
98759_f_atTUBA1 /// TUBA2 ///tubulin, alpha 1 /// tubulin, alpha 2 /// tubulin, alpha 6 /// similar to Tubulin alpha-2 chain (Alpha-tubulin 2)Source|GeneCards
93836_atBNIP3BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP3Source|GeneCards
104616_g_atGALTgalactose-1-phosphate uridyl transferaseSource|GeneCards
97241_atD19ERTD721EDNA segment, Chr 19, ERATO Doi 721, expressedSource|GeneCards
98942_r_at2310032D16RIKRIKEN cDNA 2310032D16 geneSource|GeneCards
97261_atDNAJA1DnaJ (Hsp40) homolog, subfamily A, member 1Source|GeneCards
97423_at1500035H01RIKRIKEN cDNA 1500035H01 geneSource|GeneCards
92587_atFDX1ferredoxin 1Source|GeneCards
99649_atGCLCglutamate-cysteine ligase, catalytic subunitSource|GeneCards
99076_atNR1D2nuclear receptor subfamily 1, group D, member 2Source|GeneCards
104213_atNA
104148_atH6PDhexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)Source|GeneCards
103357_atSLC2A2solute carrier family 2 (facilitated glucose transporter), member 2Source|GeneCards
103581_atCTE1cytosolic acyl-CoA thioesterase 1Source|GeneCards
102021_atIL4RAinterleukin 4 receptor, alphaSource|GeneCards
99535_atCCRN4LCCR4 carbon catabolite repression 4-like (S. cerevisiae)Source|GeneCards
97430_atSLC37A4solute carrier family 37 (glycerol-6-phosphate transporter), member 4Source|GeneCards
97546_atCLDN1claudin 1Source|GeneCards
93753_atLITAFLPS-induced TN factorSource|GeneCards
94454_atDAZAP2DAZ associated protein 2Source|GeneCards
93924_f_atTUBA7tubulin, alpha 7Source|GeneCards
96298_f_atDNCLC1dynein, cytoplasmic, light chain 1Source|GeneCards
101539_f_atCES3carboxylesterase 3Source|GeneCards
94917_atFBXO8F-box only protein 8Source|GeneCards
98111_atHSP105heat shock protein 105Source|GeneCards
96594_atHSPA4Heat shock protein 4Source|GeneCards
94420_f_atCRY1cryptochrome 1 (photolyase-like)Source|GeneCards
94948_atTRIP6thyroid hormone receptor interactor 6Source|GeneCards
103636_atMGI:1930773brain protein 17Source|GeneCards
104328_atAQP9aquaporin 9Source|GeneCards
98596_s_atST3GAL5ST3 beta-galactoside alpha-2,3-sialyltransferase 5Source|GeneCards
92440_atIRF6interferon regulatory factor 6Source|GeneCards
97243_atSLC9A3R1solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulator 1Source|GeneCards
104717_atZFP644zinc finger protein 644Source|GeneCards
94835_f_atTUBB2tubulin, beta 2Source|GeneCards
95303_atIFITM6interferon induced transmembrane protein 6Source|GeneCards
93451_atLMO7LIM domain only 7Source|GeneCards
99951_atRORCRAR-related orphan receptor gammaSource|GeneCards
97240_g_atD19ERTD721EDNA segment, Chr 19, ERATO Doi 721, expressedSource|GeneCards
103983_atADH4alcohol dehydrogenase 4 (class II), pi polypeptideSource|GeneCards
99120_f_atCHD4chromodomain helicase DNA binding protein 4Source|GeneCards
103982_s_atADH4alcohol dehydrogenase 4 (class II), pi polypeptideSource|GeneCards
92833_atHALhistidine ammonia lyaseSource|GeneCards
95148_atAK2adenylate kinase 2Source|GeneCards
98855_r_atNA
102668_atPPARAperoxisome proliferator activated receptor alphaSource|GeneCards
99847_atST3GAL1ST3 beta-galactoside alpha-2,3-sialyltransferase 1Source|GeneCards
93728_atTGFB1I4transforming growth factor beta 1 induced transcript 4Source|GeneCards
96348_atPNPLA2patatin-like phospholipase domain containing 2Source|GeneCards
94440_atAI132487expressed sequence AI132487Source|GeneCards
95727_atAPOA5apolipoprotein A-VSource|GeneCards
99930_s_atPSEN2presenilin 2Source|GeneCards
99452_atMGI:1927471liver-specific bHLH-Zip transcription factorSource|GeneCards
98575_atFASNfatty acid synthaseSource|GeneCards
92539_atS100A10S100 calcium binding protein A10 (calpactin)Source|GeneCards
93838_at2700038C09RIKRIKEN cDNA 2700038C09 geneSource|GeneCards
101593_atCRIP2cysteine rich protein 2Source|GeneCards
99098_atFDPSfarnesyl diphosphate synthetaseSource|GeneCards
93011_atGABARAPL1gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1Source|GeneCards
94418_atELOVL6ELOVL family member 6, elongation of long chain fatty acids (yeast)Source|GeneCards
98507_atNR1D1nuclear receptor subfamily 1, group D, member 1Source|GeneCards
97527_atCKS2CDC28 protein kinase regulatory subunit 2Source|GeneCards
93535_atSCA2spinocerebellar ataxia 2 homolog (human)Source|GeneCards
104070_atPCAFp300/CBP-associated factorSource|GeneCards
96771_atERBB3v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)Source|GeneCards
102382_atARNTLaryl hydrocarbon receptor nuclear translocator-likeSource|GeneCards
96890_at1300002A08RIKRIKEN cDNA 1300002A08 geneSource|GeneCards
95423_atPDIA4protein disulfide isomerase associated 4Source|GeneCards
95660_atETHE1ethylmalonic encephalopathy 1Source|GeneCards
93500_atALAS1aminolevulinic acid synthase 1Source|GeneCards
104388_atCCL9chemokine (C-C motif) ligand 9Source|GeneCards
95405_atMESDC2mesoderm development candiate 2Source|GeneCards
103284_atCYP8B1cytochrome P450, family 8, subfamily b, polypeptide 1Source|GeneCards
94325_atHMGCS13-hydroxy-3-methylglutaryl-Coenzyme A synthase 1Source|GeneCards
103665_atELOVL6ELOVL family member 6, elongation of long chain fatty acids (yeast)Source|GeneCards
94733_atABCB4ATP-binding cassette, sub-family B (MDR/TAP), member 4Source|GeneCards
104674_s_atPCSK4proprotein convertase subtilisin/kexin type 4Source|GeneCards
98989_atDHCR77-dehydrocholesterol reductaseSource|GeneCards
100343_f_atTUBA1tubulin, alpha 1Source|GeneCards
94383_atTFPI2tissue factor pathway inhibitor 2Source|GeneCards
95603_atGLDCglycine decarboxylaseSource|GeneCards
95517_i_atBC004004cDNA sequence BC004004Source|GeneCards
93528_s_atKLF9Kruppel-like factor 9Source|GeneCards
102200_atAQP8aquaporin 8Source|GeneCards
99404_atCYP7A1cytochrome P450, family 7, subfamily a, polypeptide 1Source|GeneCards
94788_f_atTUBB5tubulin, beta 5Source|GeneCards
99019_atPORP450 (cytochrome) oxidoreductaseSource|GeneCards
96037_atBRI3brain protein I3Source|GeneCards
93013_atID2inhibitor of DNA binding 2Source|GeneCards
104566_atASLargininosuccinate lyaseSource|GeneCards
104701_atBHLHB2basic helix-loop-helix domain containing, class B2Source|GeneCards
100737_atONECUT1one cut domain, family member 1Source|GeneCards
103634_atISGF3Ginterferon dependent positive acting transcription factor 3 gammaSource|GeneCards
96596_atNDRG1 /// NDRLN-myc downstream regulated gene 1 /// N-myc downstream regulated-likeSource|GeneCards
101093_atCOL4A1procollagen, type IV, alpha 1Source|GeneCards
96269_atIDI1isopentenyl-diphosphate delta isomeraseSource|GeneCards
93933_atPPP1R3Cprotein phosphatase 1, regulatory (inhibitor) subunit 3CSource|GeneCards
96774_atPLEKHC1pleckstrin homology domain containing, family C (with FERM domain) member 1Source|GeneCards
94928_atTNFRSF1Btumor necrosis factor receptor superfamily, member 1bSource|GeneCards
104407_atALCAMactivated leukocyte cell adhesion moleculeSource|GeneCards
101538_i_atCES3carboxylesterase 3Source|GeneCards
95050_atCHORDC1cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1Source|GeneCards
97924_atGNEglucosamineSource|GeneCards
94499_atMGEA5meningioma expressed antigen 5 (hyaluronidase)Source|GeneCards
100516_atCHKAcholine kinase alphaSource|GeneCards
95057_atHERPUD1homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1Source|GeneCards
96207_atRBMS1RNA binding motif, single stranded interacting protein 1Source|GeneCards
94489_atPTP4A1protein tyrosine phosphatase 4a1Source|GeneCards
102425_atTLE1transducin-like enhancer of split 1, homolog of Drosophila E(spl)Source|GeneCards
103671_atHTATIP2HIV-1 tat interactive protein 2, homolog (human)Source|GeneCards
99978_s_atMAPK14mitogen activated protein kinase 14Source|GeneCards
103611_atCD47CD47 antigen (Rh-related antigen, integrin-associated signal transducer)Source|GeneCards
98324_atFOXA3forkhead box A3Source|GeneCards
97334_atHES6hairy and enhancer of split 6 (Drosophila)Source|GeneCards
95474_atF2Rcoagulation factor II (thrombin) receptorSource|GeneCards
104390_atANP32Aacidic (leucine-rich) nuclear phosphoprotein 32 family, member ASource|GeneCards
101007_atMKNK2MAP kinase-interacting serine/threonine kinase 2Source|GeneCards
104109_atFBXO21F-box only protein 21Source|GeneCards


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