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Gene set: HISTONE_DOWN_PEART (C2:PERT:0109)
Standard nameHISTONE_DOWN_PEART
Systematic nameC2:PERT:0109
Brief descriptionCell-proliferation-related genes downregulated by SAHA and depsipeptide (histone deacetylase inhibitors)
CategoryC2: Curated
Sub-categoryPERT: Experimental pertuberation
Full description or Abstract

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Histone deacetylase inhibitors (HDACis) inhibit tumor cell growth
and survival, possibly through their ability to regulate the expression
of specific proliferative and/or apoptotic genes. However, the
HDACi-regulated genes necessary and/or sufficient for their biological
effects remain undefined. We demonstrate that the HDACis suberoylanilide
hydroxamic acid (SAHA) and depsipeptide regulate a highly overlapping
gene set with at least 22% of genes showing altered expression
over a 16-h culture period. SAHA and depsipeptide coordinately
regulated the expression of several genes within distinct apoptosis
and cell cycle pathways. Multiple genes within the Myc, type beta
TGF, cyclin/cyclin-dependent kinase, TNF, Bcl-2, and caspase pathways
were regulated in a manner that favored induction of apoptosis
and decreased cellular proliferation. APAF-1, a gene central to
the intrinsic apoptotic pathway, was induced by SAHA and depsipeptide
and shown to be important, but not essential, for HDACi-induced
cell death. Overexpression of p16(INK4A) and arrest of cells in
G(1) can suppress HDACi-mediated apoptosis. Although p16(INK4A)
did not affect the genome-wide transcription changes mediated
by SAHA, a small number of apoptotic genes, including BCLXL and
B-MYB, were differentially regulated in a manner consistent with
attenuated HDACi-mediated apoptosis in arrested cells. We demonstrate
that different HDACi alter transcription of a large and common
set of genes that control diverse molecular pathways important
for cell survival and proliferation. The ability of HDACi to target
multiple apoptotic and cell proliferation pathways may provide
a competitive advantage over other chemotherapeutic agents because
suppression/loss of a single pathway may not confer resistance
to these agents. 
Publication URL15738394
External linksna
Keywords & MeSH headingsna
OrganismHuman
Contributed byKate Stafford
Source platformGene_Symbol
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Genes

78 genes, 78 accessions (Toggle view)

GeneTitleLinks
CD3ECD3E antigen, epsilon polypeptide (TiT3 complex)Source|GeneCards
HMGA1high mobility group AT-hook 1Source|GeneCards
POLD3polymerase (DNA-directed), delta 3, accessory subunitSource|GeneCards
TUBE1tubulin, epsilon 1Source|GeneCards
HDAC4histone deacetylase 4Source|GeneCards
LCKlymphocyte-specific protein tyrosine kinaseSource|GeneCards
NME1non-metastatic cells 1, protein (NM23A) expressed inSource|GeneCards
C6ORF108chromosome 6 open reading frame 108Source|GeneCards
ATF5activating transcription factor 5Source|GeneCards
WT1Wilms tumor 1Source|GeneCards
NUBP1nucleotide binding protein 1 (MinD homolog, E. coli)Source|GeneCards
RAD21RAD21 homolog (S. pombe)Source|GeneCards
S100A11S100 calcium binding protein A11 (calgizzarin)Source|GeneCards
HDGFhepatoma-derived growth factor (high-mobility group protein 1-like)Source|GeneCards
CCNB2cyclin B2Source|GeneCards
MCM5MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)Source|GeneCards
PA2G4proliferation-associated 2G4, 38kDaSource|GeneCards
LST1Leukocyte specific transcript 1Source|GeneCards
GFI1growth factor independent 1Source|GeneCards
PLK4polo-like kinase 4 (Drosophila)Source|GeneCards
RAD51L3RAD51-like 3 (S. cerevisiae)Source|GeneCards
POLE2polymerase (DNA directed), epsilon 2 (p59 subunit)Source|GeneCards
MYCV-myc myelocytomatosis viral oncogene homolog (avian)Source|GeneCards
REPIN1replication initiator 1Source|GeneCards
ZNF330zinc finger protein 330Source|GeneCards
RBM14RNA binding motif protein 14Source|GeneCards
GRNgranulinSource|GeneCards
CUL1cullin 1Source|GeneCards
NFICnuclear factor I/C (CCAAT-binding transcription factor)Source|GeneCards
USP16ubiquitin specific peptidase 16Source|GeneCards
IFITM1interferon induced transmembrane protein 1 (9-27)Source|GeneCards
ZAKsterile alpha motif and leucine zipper containing kinase AZKSource|GeneCards
TFDP2transcription factor Dp-2 (E2F dimerization partner 2)Source|GeneCards
TP53tumor protein p53 (Li-Fraumeni syndrome)Source|GeneCards
NF1neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease)Source|GeneCards
TLK1tousled-like kinase 1Source|GeneCards
AIF1allograft inflammatory factor 1Source|GeneCards
ILF3interleukin enhancer binding factor 3, 90kDaSource|GeneCards
DTYMKdeoxythymidylate kinase (thymidylate kinase)Source|GeneCards
CCNE2cyclin E2Source|GeneCards
PLK1polo-like kinase 1 (Drosophila)Source|GeneCards
CETN3centrin, EF-hand protein, 3 (CDC31 homolog, yeast)Source|GeneCards
MCM3MCM3 minichromosome maintenance deficient 3 (S. cerevisiae)Source|GeneCards
TFDP1transcription factor Dp-1Source|GeneCards
EMP3epithelial membrane protein 3Source|GeneCards
CTBP1C-terminal binding protein 1Source|GeneCards
ZMYND11zinc finger, MYND domain containing 11Source|GeneCards
TNFRSF8tumor necrosis factor receptor superfamily, member 8Source|GeneCards
IL2RGinterleukin 2 receptor, gamma (severe combined immunodeficiency)Source|GeneCards
NME2non-metastatic cells 2, protein (NM23B) expressed inSource|GeneCards
KATNA1katanin p60 (ATPase-containing) subunit A 1Source|GeneCards
CSE1LCSE1 chromosome segregation 1-like (yeast)Source|GeneCards
BCAT1branched chain aminotransferase 1, cytosolicSource|GeneCards
PFDN1prefoldin 1Source|GeneCards
CDK2AP1CDK2-associated protein 1Source|GeneCards
MCM7MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)Source|GeneCards
SUV39H1suppressor of variegation 3-9 homolog 1 (Drosophila)Source|GeneCards
VMD2vitelliform macular dystrophy (Best disease, bestrophin)Source|GeneCards
RIOK3RIO kinase 3 (yeast)Source|GeneCards
RANRAN, member RAS oncogene familySource|GeneCards
PMS1PMS1 postmeiotic segregation increased 1 (S. cerevisiae)Source|GeneCards
IGHMBP2immunoglobulin mu binding protein 2Source|GeneCards
NBS1NibrinSource|GeneCards
BST2bone marrow stromal cell antigen 2Source|GeneCards
IL8interleukin 8Source|GeneCards
IFRD2interferon-related developmental regulator 2Source|GeneCards
CTCFCCCTC-binding factor (zinc finger protein)Source|GeneCards
SIPA1signal-induced proliferation-associated gene 1Source|GeneCards
UBE2Cubiquitin-conjugating enzyme E2CSource|GeneCards
CDC7CDC7 cell division cycle 7 (S. cerevisiae)Source|GeneCards
PPP2R1Aprotein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoformSource|GeneCards
ZWINTZW10 interactorSource|GeneCards
LIG3ligase III, DNA, ATP-dependentSource|GeneCards
NCOA6nuclear receptor coactivator 6Source|GeneCards
KNTC1kinetochore associated 1Source|GeneCards
IFI16interferon, gamma-inducible protein 16Source|GeneCards
STK6serine/threonine kinase 6Source|GeneCards


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