[an error occurred while processing this directive]
Gene set: NFKB_DOWN_HINATA (C2:PERT:0006) | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Standard name | NFKB_DOWN_HINATA | |||||||||||||||||||||||||
Systematic name | C2:PERT:0006 | |||||||||||||||||||||||||
Brief description | Genes downregulated by NF-kappa B | |||||||||||||||||||||||||
Category | C2: Curated | |||||||||||||||||||||||||
Sub-category | PERT: Experimental pertuberation | |||||||||||||||||||||||||
Full description or Abstract | NF-kappa B regulates normal and pathological processes, including neoplasia, in a tissue-context-dependent manner. In skin, NF-kappa B is implicated in epidermal homeostasis as well as in the pathogenesis of squamous cell carcinoma; however, its function in the underlying mesenchymal dermis has been unclear. To gain insight into NF-kappa B roles in these two adjacent cutaneous tissue compartments, NF-kappa B effects on expression of 12 435 genes were determined in epidermal keratinocytes and dermal fibroblasts. Although NF-kappa B induced proinflammatory and antiapoptotic genes in both settings, it exhibited divergent effects on growth regulatory genes. In keratinocytes, but not in fibroblasts, NF-kappa B induced p21(CIP1), which was sufficient to inhibit growth of both cell types. Levels of growth inhibitory factor (GIF), in contrast, were increased by NF-kappa B in both settings but inhibited growth only in keratinocytes. These findings indicate that transcription factors such as NF-kappa B can program tissue-selective effects via both differential target gene induction as well as by inducing common targets that exert differing effects depending on cellular lineage. | |||||||||||||||||||||||||
Publication URL | 12673201 | |||||||||||||||||||||||||
External links | na | |||||||||||||||||||||||||
Keywords & MeSH headings | Epithelial Cells/metabolism,Organ Specificity,Inflammation/genetics,Keratinocytes,Gene Expression Profiling,Comparative Study,I-kappa B/genetics/physiology,Transcription,Cyclins/biosynthesis/genetics,Cell Lineage,Human,Skin,Recombinant Fusion Proteins/physiology,Fibroblasts,genetics,Gene Expression Regulation,Mesoderm/cytology/metabolism,Genetic,cytology,physiology,Cell Division/drug effects,NF-kappa B,Nerve Tissue Proteins/biosynthesis/genetics,metabolism | |||||||||||||||||||||||||
Organism | Human | |||||||||||||||||||||||||
Contributed by | Broad Institute | |||||||||||||||||||||||||
Source platform | HG_U95Av2 | |||||||||||||||||||||||||
Download | grp|xml|map | |||||||||||||||||||||||||
Genes | 21 genes, 21 accessions (Toggle view)
|