| Gene set: RAS_STROMA_DOWN_CROONQUIST (C2:PERT:0068) | | Standard name | RAS_STROMA_DOWN_CROONQUIST |
| Systematic name | C2:PERT:0068 |
| Brief description | Genes downregulated in multiple myeloma cells with N-ras-activating mutations versus those co-cultured with bone marrow stromal cells. |
| Category | C2: Curated |
| Sub-category | PERT: Experimental pertuberation |
| Full description or Abstract | Toggle abstract view ANBL-6, a myeloma cell line, proliferates in response to interleukin
6 (IL-6) stimulation, coculture with bone marrow stromal cells,
and when harboring a constitutively active mutant N-ras gene.
Eighteen samples, including 4 IL-6-treated, 3 mutant N-ras-transfected,
3 normal stroma-stimulated, 2 multiple myeloma (MM) stroma-stimulated,
and 6 untreated controls were profiled using microarrays interrogating
12 626 genes. Global hierarchical clustering analysis distinguished
at least 6 unique expression signatures. Notably, the different
stimuli altered distinct functional gene programs. Class comparison
analysis (P =.001) revealed 138 genes (54% involved in cell cycle)
that distinguished IL-6-stimulated versus nontreated samples.
Eighty-seven genes distinguished stroma-stimulated versus IL-6-treated
samples (22% encoded for extracellular matrix [ECM] proteins).
A total of 130 genes distinguished N-ras transfectants versus
IL-6-treated samples (26% involved in metabolism). A total of
157 genes, 20% of these involved in signaling, distinguished N-ras
from stroma-interacting samples. All 3 stimuli shared 347 genes,
mostly of metabolic function. Genes that distinguished MM1 from
MM4 clinical groups were induced at least by one treatment. Notably,
only 3 genes (ETV5, DUSP6, and KIAA0735) are uniquely induced
in mutant ras-containing cells. We have demonstrated gene expression
patterns in myeloma cells that distinguish an intrinsic genetic
transformation event and patterns derived from both soluble factors
and cell contacts in the bone marrow microenvironment. |
| Publication URL | 12791645 |
| External links | na |
| Keywords & MeSH headings | Cell Communication/physiology,Coculture Techniques,Neoplastic/drug effects/physiology,Non-P.H.S.,Gene Expression Profiling,P.H.S.,Comparative Study,pharmacology,Phenotype,Multiple Myeloma,Humans,Tumor Cells,ras Proteins/metabolism,Stromal Cells,ras,Genes,genetics,Gene Expression Regulation,cytology,physiology,Cell Division/drug effects,Interleukin-6,Mitogen-Activated Protein Kinases/metabolism,Cultured/cytology |
| Organism | Human |
| Contributed by | Kate Stafford |
| Source platform | Seq_Accession |
| Download | grp|xml|map |
| Genes | 21 genes, 24 accessions (Toggle view) | Accession | Gene | Title | Links |
|---|
| M33680 | CD81 | CD81 antigen (target of antiproliferative antibody 1) | Source|GeneCards | | X68277 | DUSP1 | dual specificity phosphatase 1 | Source|GeneCards | | J03040 | SPARC | secreted protein, acidic, cysteine-rich (osteonectin) | Source|GeneCards | | M12125 | TPM2 | tropomyosin 2 (beta) | Source|GeneCards | | X75918 | NR4A2 | nuclear receptor subfamily 4, group A, member 2 | Source|GeneCards | | M58459 | RPS4Y1 | ribosomal protein S4, Y-linked 1 | Source|GeneCards | | K00650 | | M19267 | TPM1 | tropomyosin 1 (alpha) | Source|GeneCards | | V01512 | FOS | v-fos FBJ murine osteosarcoma viral oncogene homolog | Source|GeneCards | | AB029000 | SULF1 | sulfatase 1 | Source|GeneCards | | AI557295 | | X04430 | IL6 | interleukin 6 (interferon, beta 2) | Source|GeneCards | | L19182 | IGFBP7 | insulin-like growth factor binding protein 7 | Source|GeneCards | | J03464 | COL1A2 | collagen, type I, alpha 2 | Source|GeneCards | | X13839 | ACTA2 | actin, alpha 2, smooth muscle, aorta | Source|GeneCards | | X78947 | CTGF | connective tissue growth factor | Source|GeneCards | | X52947 | GJA1 | gap junction protein, alpha 1, 43kDa (connexin 43) | Source|GeneCards | | S77154 | NR4A2 | nuclear receptor subfamily 4, group A, member 2 | Source|GeneCards | | M35878 | IGFBP3 | insulin-like growth factor binding protein 3 | Source|GeneCards | | M77349 | TGFBI | transforming growth factor, beta-induced, 68kDa | Source|GeneCards | | D13666 | POSTN | periostin, osteoblast specific factor | Source|GeneCards | | M17733 | TMSB4X | thymosin, beta 4, X-linked | Source|GeneCards | | X52022 | COL6A3 | collagen, type VI, alpha 3 | Source|GeneCards | | U03057 | FSCN1 | fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) | Source|GeneCards |
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