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Gene set: RGTTAMWNATT_V$HNF1_01 (C3:REPM:0137)
Standard nameRGTTAMWNATT_V$HNF1_01
Systematic nameC3:REPM:0137
Brief descriptionGenes with 3'UTR containing motif RGTTAMWNATT which matches annotation for TCF1: Transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor
CategoryC3: Motif
Sub-categoryREPM: Representative motifs
Full description or Abstract

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FA HNF-1A
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SY APF; HNF1; HNF-1alpha; LF-B1; HNF-1A.
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OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia;
OC eutheria; rodentia; myomorpha; muridae; murinae
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CL C0006; homeo; 3.1.1.12.1.1.
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SZ 628 AA; 67.2 kDa (cDNA), 92-98 kDa (SDS)
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SC SwissProt #P22361
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FT 1 31 dimerization domain (by similarity).
FT 1 176 PF04814; HNF-1_N.
FT 161 186 POUs A subdomain homolog.
FT 199 279 homeo domain.
FT 199 282 SM00389; HOX.
FT 208 219 helix 1 [1].
FT 226 240 helix 2 [1].
FT 261 274 helix 3 [1].
FT 280 539 PF04812; HNF-1B_C.
FT 281 318 activation domain II (ADII).
FT 289 314 proline-rich region (10/26).
FT 540 628 PF04813; HNF-1A_C.
FT 546 628 activation domain I (ADI).
FT 583 627 serine-/threonine-rich region (20/45).
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SF glycosylation;
SF similar factor in lung: 110 + 120 kDa (SDS);
SF dimerizes in the absence of DNA [5];
SF unusual for homeobox genes, gene regions encoding helix 2 and 3 are
SF separated by an intron [2];
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CP liver, intestine, spleen, stomach, kidney
CN lung
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FF induced in F9 cells by RA, plateau after 5d [4]
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IN T00889; HNF-1B; rat, Rattus norvegicus.
IN T00890; HNF-1B; mouse, Mus musculus.
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RN [1]; RE0004697.
RX MEDLINE; 93259120.
RA Leiting B., de Francesco R., Tomei L., Cortese R., Otting G., Whthrich K.
RT The three-dimensional NMR-solution structure of the polypeptide fragment
RT 195-286 of the LFB1/HNF1 transcription factor from rat liver comprises a
RT non-classical homeodomain
RL EMBO J. 12:1797-1803 (1993).
RN [2]; RE0004692.
RX MEDLINE; 92375726.
RA Bach I., Pontoglio M., Yaniv M.
RT Structure of the gene encoding hepatocyte nuclear factor 1 (HNF1)
RL Nucleic Acids Res. 20:4199-4204 (1992).
RN [3]; RE0004693.
RX MEDLINE; 92131134.
RA Kuo C. J., Conley P. B., Chen L., Sladek F. M., Darnell J. E., Crabtree G.
RA R.
RT A transcriptional hierarchy involved in mammalian cell-type specification
RL Nature 355:457-461 (1992).
RN [4]; RE0000510.
RX MEDLINE; 91293099.
RA Kuo C. J., Mendel D. B., Hansen L. P., Crabtree G. R.
RT Independent regulation of HNF-1alpha and HNF-1beta by retinoic acid in F9
RT teratocarcinoma cells
RL EMBO J. 10:2231-2236 (1991).
RN [5]; RE0000675.
RX MEDLINE; 91257571.
RA Mendel D. B., Hansen L. P., Graves M. K., Conley P. B., Crabtree G. R.
RT HNF-1alpha and HNF-1beta (vHNF-1) share dimerization and homeo domains, but
RT not activation domains, and form heterodimers in vitro
RL Genes Dev. 5:1042-1056 (1991).
RN [6]; RE0001582.
RX MEDLINE; 91117244.
RA Liu J.-K., DiPersio C. M., Zaret K. S.
RT Extracellular signals that regulate liver transcription factors during
RT hepatic differentiation in vitro
RL Mol. Cell. Biol. 11:773-784 (1991).
RN [7]; RE0001365.
RX MEDLINE; 90287137.
RA Abraham L. J., Bradshaw A. D., Shiels B. R., Northemann W., Hudson G., Fey
RA G. H.
RT Hepatic Transcription of the Acute-Phase alpha1-Inhibitor III Gene Is
RT Controlled by a Novel Combination of cis-Acting Regulatory Elements
RL Mol. Cell. Biol. 10:3483-3491 (1990).
RN [8]; RE0002415.
RX MEDLINE; 91088607.
RA Kuo C. J., Conley P. B., Hsieh C.-L., Francke U., Crabtree S.
RT Molecular cloning, functional expression, and chromosomal localization of
RT mouse hepatocyte nuclear factor 1
RL Proc. Natl. Acad. Sci. USA 87:9838-9842 (1990).
RN [9]; RE0001386.
RX MEDLINE; 90097936.
RA Chang H.-K., Wang B.-Y., Yuh C.-H., Wei C.-L., Ting L.-P.
RT A Liver-Specific Nuclear Factor Interacts with the Promoter Region of the
RT Large Surface Protein Gene of Human Hepatitis B Virus
RL Mol. Cell. Biol. 9:5189-5197 (1989).
RN [10]; RE0001392.
RX MEDLINE; 90097908.
RA Tsutsumi K.-I., Ito K., Ishikawa K.
RT Developmental Appearance of Transcription Factors That Regulate
RT Liver-Specific Expression of the Aldolase B Gene
RL Mol. Cell. Biol. 9:4923-4931 (1989).
RN [11]; RE0002595.
RX MEDLINE; 88042798.
RA Courtois G., Morgan J. G., Campbell L. A., Fourel G., Crabtree G. R.
RT Interaction of a liver-specific nuclear factor with the fibrinogen and
RT alpha1-antitrypsin promoters
RL Science 238:688-692 (1987).
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Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
Downloadgrp|xml|map
Genes

76 genes, 76 accessions (Toggle view)

AccessionGeneTitleLinks
FLJ32844DZIP1LDAZ interacting protein 1-likeSource|GeneCards
TINAGTINAGtubulointerstitial nephritis antigenSource|GeneCards
SLC12A2SLC12A2solute carrier family 12 (sodium/potassium/chloride transporters), member 2Source|GeneCards
CLDN19CLDN19claudin 19Source|GeneCards
MLLMLLmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)Source|GeneCards
F13BF13Bcoagulation factor XIII, B polypeptideSource|GeneCards
HOXC6HOXC6homeo box C6Source|GeneCards
CDH16CDH16cadherin 16, KSP-cadherinSource|GeneCards
SLC17A2SLC17A2Solute carrier family 17 (sodium phosphate), member 2Source|GeneCards
EGR1EGR1early growth response 1Source|GeneCards
DMDDMDdystrophin (muscular dystrophy, Duchenne and Becker types)Source|GeneCards
HSPC009HSPC009HSPC009 proteinSource|GeneCards
SLC23A1SLC23A1Solute carrier family 23 (nucleobase transporters), member 1Source|GeneCards
SGK2SGK2Serum/glucocorticoid regulated kinase 2Source|GeneCards
MGC2655WDR58WD repeat domain 58Source|GeneCards
PLA1APLA1Aphospholipase A1 member ASource|GeneCards
COL16A1COL16A1collagen, type XVI, alpha 1Source|GeneCards
IGFBP1IGFBP1insulin-like growth factor binding protein 1Source|GeneCards
TCF1TCF1Transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factorSource|GeneCards
RTN4RTN4reticulon 4Source|GeneCards
DLX1DLX1distal-less homeo box 1Source|GeneCards
UGT1A6UGT1A6UDP glycosyltransferase 1 family, polypeptide A6Source|GeneCards
KIAA1706KIAA1706KIAA1706 proteinSource|GeneCards
MITFMITFmicrophthalmia-associated transcription factorSource|GeneCards
NPAS2NPAS2neuronal PAS domain protein 2Source|GeneCards
THAP11THAP11THAP domain containing 11Source|GeneCards
LOC375616LOC375616Cysteine rich BMP regulator 2 (chordin-like)Source|GeneCards
GLRA2GLRA2glycine receptor, alpha 2Source|GeneCards
BCL9BCL9B-cell CLL/lymphoma 9Source|GeneCards
FLJ31222FLJ31222FLJ31222 proteinSource|GeneCards
LOC283130LOC283130hypothetical protein LOC283130Source|GeneCards
NR5A2NR5A2nuclear receptor subfamily 5, group A, member 2Source|GeneCards
LPAL2LPAL2lipoprotein, Lp(a)-like 2Source|GeneCards
NRP2NRP2neuropilin 2Source|GeneCards
CYP26A1CYP26A1cytochrome P450, family 26, subfamily A, polypeptide 1Source|GeneCards
APOMAPOMapolipoprotein MSource|GeneCards
USP3USP3ubiquitin specific protease 3Source|GeneCards
FLJ34870FLJ34870FLJ34870 proteinSource|GeneCards
RBMS1RBMS1RNA binding motif, single stranded interacting protein 1Source|GeneCards
FGFR4FGFR4fibroblast growth factor receptor 4Source|GeneCards
LIMPDLIM5PDZ and LIM domain 5Source|GeneCards
HCFC1R1HCFC1R1host cell factor C1 regulator 1 (XPO1 dependant)Source|GeneCards
FLJ42654GOLT1Agolgi transport 1 homolog A (S. cerevisiae)Source|GeneCards
GCGCGroup-specific component (vitamin D binding protein)Source|GeneCards
HGFACHGFACHGF activatorSource|GeneCards
HOXA10HOXA10homeo box A10Source|GeneCards
SERPING1SERPING1serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)Source|GeneCards
ANXA13ANXA13annexin A13Source|GeneCards
ACSL4ACSL4acyl-CoA synthetase long-chain family member 4Source|GeneCards
HOXD4HOXD4homeo box D4Source|GeneCards
NFE2L2NFE2L2nuclear factor (erythroid-derived 2)-like 2Source|GeneCards
LOC90668LOC90668hypothetical protein BC008134Source|GeneCards
ARHGAP24ARHGAP24Rho GTPase activating protein 24Source|GeneCards
HOXC4HOXC4homeo box C4Source|GeneCards
FLJ40137FLJ40137hypothetical protein FLJ40137Source|GeneCards
PLGPLGplasminogenSource|GeneCards
AGTAGTangiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)Source|GeneCards
LIPCLIPClipase, hepaticSource|GeneCards
SLC17A4SLC17A4solute carrier family 17 (sodium phosphate), member 4Source|GeneCards
KRT25AKRT25Atype I inner root sheath specific keratin 25 irs1Source|GeneCards
MGC52019SLC5A12Solute carrier family 5 (sodium/glucose cotransporter), member 12Source|GeneCards
IFIFI factor (complement)Source|GeneCards
BMI1PCGF4polycomb group ring finger 4Source|GeneCards
ZBTB4ZBTB4zinc finger and BTB domain containing 4Source|GeneCards
POLR2APOLR2Apolymerase (RNA) II (DNA directed) polypeptide A, 220kDaSource|GeneCards
TCF2TCF2transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factorSource|GeneCards
TTRTTRtransthyretin (prealbumin, amyloidosis type I)Source|GeneCards
C11ORF9C11ORF9chromosome 11 open reading frame 9Source|GeneCards
UNQ541UNQ541GSGL541Source|GeneCards
GRB7GRB7growth factor receptor-bound protein 7Source|GeneCards
COL9A1COL9A1collagen, type IX, alpha 1Source|GeneCards
MGC13053MGC13053hypothetical protein MGC13053Source|GeneCards
G6PCG6PCglucose-6-phosphatase, catalytic (glycogen storage disease type I, von Gierke disease)Source|GeneCards
LCTLCTlactaseSource|GeneCards
HABP2HABP2hyaluronan binding protein 2Source|GeneCards
FLJ20225RNF186ring finger protein 186Source|GeneCards


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