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Gene set: V$PAX8_B (C3:TFAC:0188)
Standard nameV$PAX8_B
Systematic nameC3:TFAC:0188
Brief descriptionGenes with 3'UTR containing motif NCNNTNNTGCRTGANNNN which matches annotation for PAX8: paired box gene 8
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract
XX
 XX
 XX
 FA Pax-8
 XX
 SY PAX8; zPax8.
 XX

OS zebra fish, Brachydanio rerio
 OC eukaryota; animalia; metazoa;
chordata; vertebrata; osteichthyes;
 OC actinopterygii; cypriniformes;
cyprinoidei; cyprinidae
 XX
 CL C0017; paired.
 XX

SZ >429 AA; >45.7 kDa (cDNA)
 XX
 XX
 SC translated from
EMBL #AF072549
 XX
 FT 1 116 part of paired domain.

FT 1 113 PF00292; PAX.
 FT 1 113 SM00351; PAX.
 FT 156 163
conserved octapeptide.
 FT 196 223 partial homeo domain.

XX
 SF Pax-8 represents the earliest known marker for the development
of the otic
 SF system both in fish and mammals [1];
 SF
Pax2/5/8 have overlapping expression patterns [1];
 XX

CP (embryo >8 h:) midbrain-hindbrain boundary, (embryo stage 3-12:)
otic
 CP placode primordium, (embryo stage 10-27:) pronephros,
nephric ducts,
 CP (embryo >stage 20:) retina [1]
 XX

FF involved (together with Pax-2/5) in the formation of the midbrain-hindbrain

FF boundary [1]
 XX
 XX
 XX
 RN [1]; RE0014326.

RX MEDLINE; 98337826.
 RA Pfeffer P. L., Gerster T., Lun K.,
Brand M., Busslinger M.
 RT Characterization of three novel
members of the zebrafish Pax2/5/8 family:
 RT dependency of
Pax5 and Pax8 expression on the Pax2.1 (noi) function
 RL Development
125:3063-3074 (1998).
 XX
Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
Downloadgrp|xml|map
Genes

108 genes, 108 accessions (Toggle view)

AccessionGeneTitleLinks
C10ORF11C10ORF11chromosome 10 open reading frame 11Source|GeneCards
TANKTANKTRAF family member-associated NFKB activatorSource|GeneCards
PAPPAPAPPApregnancy-associated plasma protein ASource|GeneCards
HOXB4HOXB4homeo box B4Source|GeneCards
CLTCCLTCclathrin, heavy polypeptide (Hc)Source|GeneCards
ZNF533ZNF533Zinc finger protein 533Source|GeneCards
DLG2DLG2Discs, large homolog 2, chapsyn-110 (Drosophila)Source|GeneCards
TIA1TIA1TIA1 cytotoxic granule-associated RNA binding proteinSource|GeneCards
HOXB5HOXB5homeo box B5Source|GeneCards
EML1EML1echinoderm microtubule associated protein like 1Source|GeneCards
RHOQRHOQras homolog gene family, member QSource|GeneCards
BDNFBDNFbrain-derived neurotrophic factorSource|GeneCards
NEUROD6NEUROD6neurogenic differentiation 6Source|GeneCards
GPC4GPC4glypican 4Source|GeneCards
GTL3GTL3likely ortholog of mouse gene trap locus 3Source|GeneCards
MNTMNTMAX binding proteinSource|GeneCards
RC3NRGNneurogranin (protein kinase C substrate, RC3)Source|GeneCards
BHLHB5BHLHB5basic helix-loop-helix domain containing, class B, 5Source|GeneCards
NPM3NPM3nucleophosmin/nucleoplasmin, 3Source|GeneCards
NYD-SP18NYD-SP18testes development-related NYD-SP18Source|GeneCards
LHFPL1LHFPL1lipoma HMGIC fusion partner-like 1Source|GeneCards
SSB1SSB1SPRY domain-containing SOCS box protein SSB-1Source|GeneCards
C20ORF17C20ORF17chromosome 20 open reading frame 17Source|GeneCards
SUPT16HSUPT16Hsuppressor of Ty 16 homolog (S. cerevisiae)Source|GeneCards
SP6SP6Sp6 transcription factorSource|GeneCards
OLFM2OLFM2olfactomedin 2Source|GeneCards
PIK3R3PIK3R3phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)Source|GeneCards
FLJ10597C1ORF164chromosome 1 open reading frame 164Source|GeneCards
PAK1IP1PAK1IP1PAK1 interacting protein 1Source|GeneCards
OSBPL7OSBPL7oxysterol binding protein-like 7Source|GeneCards
DIO2DIO2deiodinase, iodothyronine, type IISource|GeneCards
HPNHPNhepsin (transmembrane protease, serine 1)Source|GeneCards
TRERF1TRERF1transcriptional regulating factor 1Source|GeneCards
RNPC2RNPC2RNA-binding region (RNP1, RRM) containing 2Source|GeneCards
HIVEP1HIVEP1human immunodeficiency virus type I enhancer binding protein 1Source|GeneCards
ABLIM3ABLIM3actin binding LIM protein family, member 3Source|GeneCards
ACTN1ACTN1actinin, alpha 1Source|GeneCards
RERGRERGRAS-like, estrogen-regulated, growth-inhibitorSource|GeneCards
NOL4NOL4nucleolar protein 4Source|GeneCards
RARBRARBretinoic acid receptor, betaSource|GeneCards
MYF5MYF5myogenic factor 5Source|GeneCards
C9ORF25C9ORF25chromosome 9 open reading frame 25Source|GeneCards
KLHL13KLHL13kelch-like 13 (Drosophila)Source|GeneCards
GABRA1GABRA1gamma-aminobutyric acid (GABA) A receptor, alpha 1Source|GeneCards
CAMK1DCAMK1Dcalcium/calmodulin-dependent protein kinase IDSource|GeneCards
APBA2BPAPBA2BPamyloid beta (A4) precursor protein-binding, family A, member 2 binding proteinSource|GeneCards
SH3GL3SH3GL3SH3-domain GRB2-like 3Source|GeneCards
MGC13114MGC13114hypothetical protein MGC13114Source|GeneCards
JMJD1CJMJD1Cjumonji domain containing 1CSource|GeneCards
KIAA1468KIAA1468KIAA1468 proteinSource|GeneCards
MYBPC1MYBPC1myosin binding protein C, slow typeSource|GeneCards
WNT4WNT4wingless-type MMTV integration site family, member 4Source|GeneCards
ALCAMALCAMactivated leukocyte cell adhesion moleculeSource|GeneCards
POU4F3POU4F3POU domain, class 4, transcription factor 3Source|GeneCards
ATP1B4ATP1B4ATPase, (Na+)/K+ transporting, beta 4 polypeptideSource|GeneCards
TWIST1TWIST1twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila)Source|GeneCards
PURAPURApurine-rich element binding protein ASource|GeneCards
PTCHPTCHpatched homolog (Drosophila)Source|GeneCards
FLJ37794FLJ37794hypothetical protein FLJ37794Source|GeneCards
FLJ20716FAM70Afamily with sequence similarity 70, member ASource|GeneCards
SLC25A28SLC25A28solute carrier family 25, member 28Source|GeneCards
PPM1APPM1Aprotein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoformSource|GeneCards
CALD1CALD1caldesmon 1Source|GeneCards
TCF7L2TCF7L2transcription factor 7-like 2 (T-cell specific, HMG-box)Source|GeneCards
GABRG2GABRG2gamma-aminobutyric acid (GABA) A receptor, gamma 2Source|GeneCards
SRPK2SRPK2SFRS protein kinase 2Source|GeneCards
FLJ43965CCDC4coiled-coil domain containing 4Source|GeneCards
GPR27GPR27G protein-coupled receptor 27Source|GeneCards
DKFZP762A217DKFZP762A217hypothetical protein DKFZp762A217Source|GeneCards
TEKTEKTEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)Source|GeneCards
HOXD8HOXD8homeo box D8Source|GeneCards
NEUROG1NEUROG1neurogenin 1Source|GeneCards
DNAI1DNAI1dynein, axonemal, intermediate polypeptide 1Source|GeneCards
BA108L7.2BA108L7.2similar to rat tricarboxylate carrier-like proteinSource|GeneCards
HOXD12HOXD12homeo box D12Source|GeneCards
AHCYL1AHCYL1S-adenosylhomocysteine hydrolase-like 1Source|GeneCards
MGC45441CCDC23coiled-coil domain containing 23Source|GeneCards
NRG1NRG1neuregulin 1Source|GeneCards
HRHRhairless homolog (mouse)Source|GeneCards
RHOBTB1RHOBTB1Rho-related BTB domain containing 1Source|GeneCards
TIAF1TIAF1TGFB1-induced anti-apoptotic factor 1Source|GeneCards
CNTN6CNTN6contactin 6Source|GeneCards
ELK4ELK4ELK4, ETS-domain protein (SRF accessory protein 1)Source|GeneCards
PDZK7PDZK7PDZ domain containing 7Source|GeneCards
LOC145497LOC145497hypothetical protein LOC145497Source|GeneCards
GGNGGNgametogenetinSource|GeneCards
PRDCGREM2gremlin 2, cysteine knot superfamily, homolog (Xenopus laevis)Source|GeneCards
IARSIARSisoleucine-tRNA synthetaseSource|GeneCards
FLJ20668MARCH1membrane-associated ring finger (C3HC4) 1Source|GeneCards
HOXB7HOXB7homeo box B7Source|GeneCards
BNC2BNC2basonuclin 2Source|GeneCards
HOXB8HOXB8homeo box B8Source|GeneCards
ATP5G1ATP5G1ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1Source|GeneCards
NR1D1NR1D1nuclear receptor subfamily 1, group D, member 1Source|GeneCards
HNRPA0HNRPA0heterogeneous nuclear ribonucleoprotein A0Source|GeneCards
TSPAN-2TSPAN2tetraspanin 2Source|GeneCards
MAN1C1MAN1C1mannosidase, alpha, class 1C, member 1Source|GeneCards
RGS12RGS12regulator of G-protein signalling 12Source|GeneCards
PPP2R2BPPP2R2Bprotein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoformSource|GeneCards
KCNQ1DNKCNQ1DNKCNQ1 downstream neighborSource|GeneCards
DKFZP564D172DKFZP564D172hypothetical protein DKFZp564D172Source|GeneCards
ELMO3ELMO3engulfment and cell motility 3 (ced-12 homolog, C. elegans)Source|GeneCards
OA48-18
HOXA9HOXA9homeo box A9Source|GeneCards
PUM2PUM2pumilio homolog 2 (Drosophila)Source|GeneCards
TAF5TAF5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDaSource|GeneCards
MAP2K5MAP2K5mitogen-activated protein kinase kinase 5Source|GeneCards
FEZLZNF312zinc finger protein 312Source|GeneCards

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