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Gene set: V$CHX10_01 (C3:TFAC:0232)
Standard nameV$CHX10_01
Systematic nameC3:TFAC:0232
Brief descriptionGenes with 3'UTR containing motif NNNTAATTAGCNNN which matches annotation for VSX1: visual system homeobox 1 homolog, CHX10-like (zebrafish)
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract

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XX
 XX
 XX
 FA Chx10
 XX
 OS chick, Gallus gallus

OC eukaryota; animalia; metazoa; chordata; vertebrata; aves; neornithes;

OC neognathae; galliformes; phasianidae
 XX
 HO ceh-10 
(C. elegans)
 XX
 CL C0006; homeo.
 XX
 SZ 377 AA;
40.6 kDa (cDNA)
 XX
 XX
 SC translated from EMBL #AF178671

XX
 FT 22 26 alanine-rich region (5/5).
 FT 27 32 proline-rich
region (6/6).
 FT 50 57 conserved octapeptide [3].
 FT 167
226 homeo domain (paired type).
 FT 167 229 SM00389; HOX.

FT 168 224 PF00046; homeobox.
 FT 228 280 CVC domain [1].

FT 318 338 PF03826; OAR.
 FT 321 335 OAR domain [2].
 XX

SF contains CVC domain which is a conserved region in Chx10/Vsx-1

 SF    and ceh-10 
[3] [1];
 SF OAR domain (initials of Otp, Aristaless and Rax)
is a conserved region
 SF C-terminal of the homeo domain [2];

SF two orthologs in chicken: Chx10 and Chx10-1  [1];

XX
 CP (stage 12:) neural retina of invaginating optic vesicles,
(stage 12-15:)
 CP ventral spinal cord, (stage 14-18:) neural
retina, (stage 21-23:) retinal
 CP neuroepithelium, (stage
29:) vitreal region, (stage 35-adult:) bipolar
 CP cells of
inner nuclear layer [1]
 CN (stage 12:) pigment epithelium,
lens, (stage 35-adult:) inner half of
 CN nuclear layer, ganglion
cells [1]
 XX
 XX
 XX
 RN [1]; RE0015514.
 RX MEDLINE;
20108593.
 RA Amy Chen C. M., Cepko C. L.
 RT Expression
of Chx10 and Chx10-1 in the developing chicken retina
 RL Mech.
Dev. 90:293-297 (2000).
 RN [2]; RE0014693.
 RX MEDLINE;
97250494.
 RA Furukawa T., Kozak C. A., Cepko C. L.
 RT
rax, a novel paired-type homeobox gene, shows expression in the
anterior
 RT neural fold and developing retina
 RL Proc.
Natl. Acad. Sci. USA 94:3088-3093 (1997).
 RN [3]; RE0015515.

RX MEDLINE; 95309110.
 RA Svendsen P. C., McGhee J. D.

RT The C. elegans neuronally expressed homeobox gene ceh-10 is
closely related
 RT to genes expressed in the vertebrate eye

RL Development 121:1253-1262 (1995).
 XX
Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
Downloadgrp|xml|map
Genes

230 genes, 230 accessions (Toggle view)

AccessionGeneTitleLinks
MYH1MYH1myosin, heavy polypeptide 1, skeletal muscle, adultSource|GeneCards
WNT5AWNT5Awingless-type MMTV integration site family, member 5ASource|GeneCards
IRX4IRX4iroquois homeobox protein 4Source|GeneCards
FAM11AFAM11Afamily with sequence similarity 11 member ASource|GeneCards
CDH20CDH20cadherin 20, type 2Source|GeneCards
TFCP2L2GRHL1grainyhead-like 1 (Drosophila)Source|GeneCards
GPC3GPC3glypican 3Source|GeneCards
HESX1HESX1homeo box (expressed in ES cells) 1Source|GeneCards
FBXO40FBXO40F-box protein 40Source|GeneCards
MLLT10MLLT10myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10Source|GeneCards
LMO3LMO3LIM domain only 3 (rhombotin-like 2)Source|GeneCards
SHOX2SHOX2short stature homeobox 2Source|GeneCards
DHX38DHX38DEAH (Asp-Glu-Ala-His) box polypeptide 38Source|GeneCards
C8AC8Acomplement component 8, alpha polypeptideSource|GeneCards
VAMP8VAMP8vesicle-associated membrane protein 8 (endobrevin)Source|GeneCards
PITX2PITX2paired-like homeodomain transcription factor 2Source|GeneCards
GPR158GPR158G protein-coupled receptor 158Source|GeneCards
CEICEICEI proteinSource|GeneCards
TLE4TLE4transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)Source|GeneCards
GAP43GAP43growth associated protein 43Source|GeneCards
PLXNA2PLXNA2plexin A2Source|GeneCards
ATP6AP2ATP6AP2ATPase, H+ transporting, lysosomal accessory protein 2Source|GeneCards
FYNFYNFYN oncogene related to SRC, FGR, YESSource|GeneCards
CACNB3CACNB3calcium channel, voltage-dependent, beta 3 subunitSource|GeneCards
FLJ22313FLJ22313hypothetical protein FLJ22313Source|GeneCards
ROBO3ROBO3roundabout, axon guidance receptor, homolog 3 (Drosophila)Source|GeneCards
MS4A1MS4A1membrane-spanning 4-domains, subfamily A, member 1Source|GeneCards
DNAJC5BDNAJC5BDnaJ (Hsp40) homolog, subfamily C, member 5 betaSource|GeneCards
GPR23GPR23G protein-coupled receptor 23Source|GeneCards
SLC26A7SLC26A7solute carrier family 26, member 7Source|GeneCards
HOXC12HOXC12homeo box C12Source|GeneCards
ADD3ADD3adducin 3 (gamma)Source|GeneCards
LDB2LDB2LIM domain binding 2Source|GeneCards
ADRA1AADRA1Aadrenergic, alpha-1A-, receptorSource|GeneCards
OGTOGTO-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)Source|GeneCards
FZD7FZD7frizzled homolog 7 (Drosophila)Source|GeneCards
H2AFZH2AFZH2A histone family, member ZSource|GeneCards
PCDH18PCDH18protocadherin 18Source|GeneCards
CSCScitrate synthaseSource|GeneCards
LAF4LAF4lymphoid nuclear protein related to AF4Source|GeneCards
DIXDC1DIXDC1DIX domain containing 1Source|GeneCards
HCRTHCRThypocretin (orexin) neuropeptide precursorSource|GeneCards
C6ORF145C6ORF145chromosome 6 open reading frame 145Source|GeneCards
FLJ10330PRPF38BPRP38 pre-mRNA processing factor 38 (yeast) domain containing BSource|GeneCards
RP1L1RP1L1retinitis pigmentosa 1-like 1Source|GeneCards
MGC33926MGC33926hypothetical protein MGC33926Source|GeneCards
MGC45474SLC44A3solute carrier family 44, member 3Source|GeneCards
NR2F1NR2F1nuclear receptor subfamily 2, group F, member 1Source|GeneCards
FOXB1FOXB1forkhead box B1Source|GeneCards
SEMA5BSEMA5Bsema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5BSource|GeneCards
LTBP3LTBP3Latent transforming growth factor beta binding protein 3Source|GeneCards
BASP1BASP1brain abundant, membrane attached signal protein 1Source|GeneCards
VLDLRVLDLRvery low density lipoprotein receptorSource|GeneCards
PURAPURApurine-rich element binding protein ASource|GeneCards
TTF2TTF2Transcription termination factor, RNA polymerase IISource|GeneCards
ETV1ETV1ets variant gene 1Source|GeneCards
NPR3NPR3natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)Source|GeneCards
NEBLNEBLnebuletteSource|GeneCards
MSX1MSX1msh homeo box homolog 1 (Drosophila)Source|GeneCards
SACM1LSACM1LSAC1 suppressor of actin mutations 1-like (yeast)Source|GeneCards
SSH2SSH2slingshot 2Source|GeneCards
NFIBNFIBnuclear factor I/BSource|GeneCards
PPP1R1BPPP1R1Bprotein phosphatase 1, regulatory (inhibitor) subunit 1B (dopamine and cAMP regulated phosphoprotein, DARPP-32)Source|GeneCards
PHOX2BPHOX2Bpaired-like homeobox 2bSource|GeneCards
RTN4RL1RTN4RL1reticulon 4 receptor-like 1Source|GeneCards
DLX1DLX1distal-less homeo box 1Source|GeneCards
BACH1BACH1BTB and CNC homology 1, basic leucine zipper transcription factor 1Source|GeneCards
FOXF2FOXF2forkhead box F2Source|GeneCards
MITFMITFmicrophthalmia-associated transcription factorSource|GeneCards
IRX2IRX2iroquois homeobox protein 2Source|GeneCards
NEUROG1NEUROG1neurogenin 1Source|GeneCards
FLJ30656FLJ30656hypothetical protein FLJ30656Source|GeneCards
OVOL1OVOL1ovo-like 1(Drosophila)Source|GeneCards
GNAO1GNAO1guanine nucleotide binding protein (G protein), alpha activating activity polypeptide OSource|GeneCards
SYNE2SYNE2spectrin repeat containing, nuclear envelope 2Source|GeneCards
C20ORF112C20ORF112chromosome 20 open reading frame 112Source|GeneCards
FOSBFOSBFBJ murine osteosarcoma viral oncogene homolog BSource|GeneCards
ELMO2ELMO2engulfment and cell motility 2 (ced-12 homolog, C. elegans)Source|GeneCards
LRRTM1LRRTM1leucine-rich repeat transmembrane neuronal 1 proteinSource|GeneCards
LHX5LHX5LIM homeobox 5Source|GeneCards
RHBDL4RHBDL4rhomboid, veinlet-like 4 (Drosophila)Source|GeneCards
RPL34RPL34ribosomal protein L34Source|GeneCards
VSNL1VSNL1visinin-like 1Source|GeneCards
MYBPC2MYBPC2myosin binding protein C, fast typeSource|GeneCards
FLJ30213YPEL4yippee-like 4 (Drosophila)Source|GeneCards
PRLPRLprolactinSource|GeneCards
FLRT3FLRT3fibronectin leucine rich transmembrane protein 3Source|GeneCards
HOXB7HOXB7homeo box B7Source|GeneCards
FLJ20308FLJ20308hypothetical protein FLJ20308Source|GeneCards
BACE2BACE2beta-site APP-cleaving enzyme 2Source|GeneCards
HOXC4HOXC4homeo box C4Source|GeneCards
WNT3AWNT3Awingless-type MMTV integration site family, member 3ASource|GeneCards
PDZRN4PDZRN4PDZ domain containing RING finger 4Source|GeneCards
TUBB4TUBB4tubulin, beta 4Source|GeneCards
ACCN2ACCN2amiloride-sensitive cation channel 2, neuronalSource|GeneCards
GR6GR6putative GR6 proteinSource|GeneCards
KCNQ1DNKCNQ1DNKCNQ1 downstream neighborSource|GeneCards
ZFH4ZFHX4zinc finger homeodomain 4Source|GeneCards
PDCPDCphosducinSource|GeneCards
FOXP2FOXP2forkhead box P2Source|GeneCards
ZNF423ZNF423zinc finger protein 423Source|GeneCards
POU2F1POU2F1POU domain, class 2, transcription factor 1Source|GeneCards
RNF39RNF39ring finger protein 39Source|GeneCards
WNT10AWNT10Awingless-type MMTV integration site family, member 10ASource|GeneCards
RPP25RPP25RNase P protein subunit p25Source|GeneCards
SFRP1SFRP1secreted frizzled-related protein 1Source|GeneCards
DLG2DLG2Discs, large homolog 2, chapsyn-110 (Drosophila)Source|GeneCards
EN1EN1engrailed homolog 1Source|GeneCards
MTUS1MTUS1mitochondrial tumor suppressor 1Source|GeneCards
PPP1R16APPP1R16Aprotein phosphatase 1, regulatory (inhibitor) subunit 16ASource|GeneCards
HS747E2AHS747E2Ahypothetical protein HS747E2ASource|GeneCards
LOC283514LOC283514similar to seven in absentia 2Source|GeneCards
PROK2PROK2prokineticin 2Source|GeneCards
LOC56901LOC56901NADH:ubiquinone oxidoreductase MLRQ subunit homologSource|GeneCards
CHRNA2CHRNA2cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)Source|GeneCards
SP7SP7Sp7 transcription factorSource|GeneCards
LOC51057LOC51057hypothetical protein LOC51057Source|GeneCards
C20ORF140TBC1D20TBC1 domain family, member 20Source|GeneCards
BMP1BMP1bone morphogenetic protein 1Source|GeneCards
CENTG3CENTG3centaurin, gamma 3Source|GeneCards
CDH9CDH9cadherin 9, type 2 (T1-cadherin)Source|GeneCards
PIK3R3PIK3R3phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)Source|GeneCards
FGF19FGF19fibroblast growth factor 19Source|GeneCards
AP1S2AP1S2adaptor-related protein complex 1, sigma 2 subunitSource|GeneCards
BMP4BMP4bone morphogenetic protein 4Source|GeneCards
NFIL3NFIL3nuclear factor, interleukin 3 regulatedSource|GeneCards
LOC388407LOC388407hypothetical gene supported by BC046200Source|GeneCards
NEO1NEO1neogenin homolog 1 (chicken)Source|GeneCards
TITF1TITF1thyroid transcription factor 1Source|GeneCards
BCL6BCL6B-cell CLL/lymphoma 6 (zinc finger protein 51)Source|GeneCards
FLJ23191FLJ23191hypothetical protein FLJ23191Source|GeneCards
LRFN5LRFN5Leucine rich repeat and fibronectin type III domain containing 5Source|GeneCards
NTRK1NTRK1neurotrophic tyrosine kinase, receptor, type 1Source|GeneCards
CHST8CHST8carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8Source|GeneCards
GDF8GDF8growth differentiation factor 8Source|GeneCards
FLJ30058FLJ30058hypothetical protein FLJ30058Source|GeneCards
NDST4NDST4N-deacetylase/N-sulfotransferase 4Source|GeneCards
ATP2B4ATP2B4ATPase, Ca++ transporting, plasma membrane 4Source|GeneCards
U2AF2U2AF2U2 (RNU2) small nuclear RNA auxiliary factor 2Source|GeneCards
LOC286480LOC286480Ubiquitin-conjugating enzyme E2E 4 pseudogeneSource|GeneCards
ZFP36L1ZFP36L1zinc finger protein 36, C3H type-like 1Source|GeneCards
OTOP3OTOP3otopetrin 3Source|GeneCards
PRRX1PRRX1paired related homeobox 1Source|GeneCards
MAP4MAP4microtubule-associated protein 4Source|GeneCards
C7ORF9C7ORF9chromosome 7 open reading frame 9Source|GeneCards
ADAMTS17ADAMTS17a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17Source|GeneCards
TFAP2BTFAP2Btranscription factor AP-2 beta (activating enhancer binding protein 2 beta)Source|GeneCards
PPM1EPPM1Eprotein phosphatase 1E (PP2C domain containing)Source|GeneCards
IMPG2IMPG2interphotoreceptor matrix proteoglycan 2Source|GeneCards
SLC37A4SLC37A4solute carrier family 37 (glycerol-6-phosphate transporter), member 4Source|GeneCards
GRM5GRM5glutamate receptor, metabotropic 5Source|GeneCards
FLJ45187FLJ45187FLJ45187 proteinSource|GeneCards
KRT25AKRT25Atype I inner root sheath specific keratin 25 irs1Source|GeneCards
CYFIP2CYFIP2cytoplasmic FMR1 interacting protein 2Source|GeneCards
THRAP4THRAP4thyroid hormone receptor associated protein 4Source|GeneCards
CA2CA2carbonic anhydrase IISource|GeneCards
FILIP1FILIP1filamin A interacting protein 1Source|GeneCards
SLC7A9SLC7A9solute carrier family 7 (cationic amino acid transporter, y+ system), member 9Source|GeneCards
POGZPOGZpogo transposable element with ZNF domainSource|GeneCards
ELF4ELF4E74-like factor 4 (ets domain transcription factor)Source|GeneCards
DLPTXNL4Bthioredoxin-like 4BSource|GeneCards
POU4F3POU4F3POU domain, class 4, transcription factor 3Source|GeneCards
PAX6PAX6paired box gene 6 (aniridia, keratitis)Source|GeneCards
SLITRK1SLITRK1SLIT and NTRK-like family, member 1Source|GeneCards
LBX1LBX1transcription factor similar to D. melanogaster homeodomain protein lady bird lateSource|GeneCards
CASKCASKcalcium/calmodulin-dependent serine protein kinase (MAGUK family)Source|GeneCards
USP44USP44ubiquitin specific protease 44Source|GeneCards
PEPP3PLEKHA6pleckstrin homology domain containing, family A member 6Source|GeneCards
DNAJB4DNAJB4DnaJ (Hsp40) homolog, subfamily B, member 4Source|GeneCards
C5ORF11C5ORF11chromosome 5 open reading frame 11Source|GeneCards
RASL10BRASL10BRAS-like, family 10, member BSource|GeneCards
DMRTA1DMRTA1DMRT-like family A1Source|GeneCards
CGACGAGlycoprotein hormones, alpha polypeptideSource|GeneCards
DMDDMDdystrophin (muscular dystrophy, Duchenne and Becker types)Source|GeneCards
RAPGEFL1RAPGEFL1Rap guanine nucleotide exchange factor (GEF)-like 1Source|GeneCards
BAMBIBAMBIBMP and activin membrane-bound inhibitor homolog (Xenopus laevis)Source|GeneCards
PRKACAPRKACAProtein kinase, cAMP-dependent, catalytic, alphaSource|GeneCards
BARHL2BARHL2BarH-like 2 (Drosophila)Source|GeneCards
ZIC1ZIC1Zic family member 1 (odd-paired homolog, Drosophila)Source|GeneCards
FLJ39779FLJ39779FLJ39779 proteinSource|GeneCards
DAAM2DAAM2dishevelled associated activator of morphogenesis 2Source|GeneCards
MGC33190ATXN7L4ataxin 7-like 4Source|GeneCards
FLJ46300FLJ46300FLJ46300 proteinSource|GeneCards
KIAA1747LOC57795hypothetical protein from clone 24828Source|GeneCards
ZIC4ZIC4Zic family member 4Source|GeneCards
CNN3CNN3calponin 3, acidicSource|GeneCards
PRNDPRNDprion protein 2 (dublet)Source|GeneCards
PAX8PAX8paired box gene 8Source|GeneCards
TCF1TCF1Transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factorSource|GeneCards
FLJ37673FLJ37673hypothetical protein FLJ37673Source|GeneCards
SND1SND1staphylococcal nuclease domain containing 1Source|GeneCards
NR6A1NR6A1nuclear receptor subfamily 6, group A, member 1Source|GeneCards
C10ORF4C10ORF4chromosome 10 open reading frame 4Source|GeneCards
CX36CX36connexin-36Source|GeneCards
CDH6CDH6cadherin 6, type 2, K-cadherin (fetal kidney)Source|GeneCards
SUCLG2SUCLG2succinate-CoA ligase, GDP-forming, beta subunitSource|GeneCards
MYST4MYST4MYST histone acetyltransferase (monocytic leukemia) 4Source|GeneCards
PITX1PITX1paired-like homeodomain transcription factor 1Source|GeneCards
MAOAMAOAmonoamine oxidase ASource|GeneCards
FIGNFIGNfidgetinSource|GeneCards
PCDH9PCDH9protocadherin 9Source|GeneCards
SLC24A2SLC24A2solute carrier family 24 (sodium/potassium/calcium exchanger), member 2Source|GeneCards
KCNK2KCNK2Potassium channel, subfamily K, member 2Source|GeneCards
SEMA6CSEMA6Csema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6CSource|GeneCards
THRATHRAthyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)Source|GeneCards
LMO1LMO1LIM domain only 1 (rhombotin 1)Source|GeneCards
DSCR1DSCR1Down syndrome critical region gene 1Source|GeneCards
OTPOTPorthopedia homolog (Drosophila)Source|GeneCards
BHLHB3BHLHB3basic helix-loop-helix domain containing, class B, 3Source|GeneCards
DDX6DDX6DEAD (Asp-Glu-Ala-Asp) box polypeptide 6Source|GeneCards
PTPRGPTPRGprotein tyrosine phosphatase, receptor type, GSource|GeneCards
MGC22001MGC22001hypothetical protein MGC22001Source|GeneCards
CDKN2CCDKN2Ccyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)Source|GeneCards
OTX2OTX2orthodenticle homolog 2 (Drosophila)Source|GeneCards
ATP5G1ATP5G1ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1Source|GeneCards
PPAP2APPAP2Aphosphatidic acid phosphatase type 2ASource|GeneCards
GPRC5CGPRC5CG protein-coupled receptor, family C, group 5, member CSource|GeneCards
RGS12RGS12regulator of G-protein signalling 12Source|GeneCards
OA48-18
KCNMA1KCNMA1potassium large conductance calcium-activated channel, subfamily M, alpha member 1Source|GeneCards
PRKAB1PRKAB1protein kinase, AMP-activated, beta 1 non-catalytic subunitSource|GeneCards
CGNCGNcingulinSource|GeneCards
STX7STX7syntaxin 7Source|GeneCards
BTBD3BTBD3BTB (POZ) domain containing 3Source|GeneCards
RBP3RBP3retinol binding protein 3, interstitialSource|GeneCards
SEZ6LSEZ6Lseizure related 6 homolog (mouse)-likeSource|GeneCards
MAP2K5MAP2K5mitogen-activated protein kinase kinase 5Source|GeneCards
NLGN2NLGN2neuroligin 2Source|GeneCards
FEZLZNF312zinc finger protein 312Source|GeneCards
DNAJB8DNAJB8DnaJ (Hsp40) homolog, subfamily B, member 8Source|GeneCards

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