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Gene set: V$HMX1_01 (C3:TFAC:0230)
Standard nameV$HMX1_01
Systematic nameC3:TFAC:0230
Brief descriptionGenes with 3'UTR containing motif CAAGTGCGTG which matches annotation for HMX1: homeo box (H6 family) 1
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract

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XX
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FA Hmx3
XX
SY H6 homeobox 3; NKX5-1; Nkx-5.1.
XX
OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia;
OC eutheria; rodentia; myomorpha; muridae; murinae
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CL C0006; homeo.
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SZ 458 AA; 49.2 kDa (cDNA)
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XX
SC translated from EMBL #X75330
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FT 329 388 homeo domain.
FT 329 391 SM00389; HOX.
FT 330 386 PF00046; homeobox.
FT 421 427 alanine-rich region (6/7).
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SF 92% amino acid identity to the homeo domain of Hmx2 [2];
SF Hmx3 and Hmx2 are clustered on chromosome 7 [2];
SF Hmx3 and Hmx2 have overlapping spatial expression patterns but the
SF onset of Hmx3 transcription begins much earlier [1];
SF represents an early and probably the earliest marker for inner ear
SF development [1];
SF Hmx3 -/- mice hava a diminished postnatal viability, show circling
SF behavior, inner ear defects and reproductive defects (perturbed embryo
SF implantation) and altered Wnt expression [4];
SF glutamine residue at position 50 (Gln50) of the homeo domain is responsible
SF for binding a CAAG core instead of the common TAAT core [3];
SF a 3' flanking TG dinucleotide contributes to an optimal DNA binding [3];
SF Titf1 and Nkx2-5 (both with Gln50) have the same CAAGTG
SF binding consensus [3];
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CP uterus [4]
EX brain,,,Theiler Stage 17;medium; RNAse protection assay; RNA (undefined);
EX [2].
EX brain,,,Theiler Stage 21;very high; RNAse protection assay; RNA
EX (undefined); [2].
EX brain,,,Theiler Stage 24;high; RNAse protection assay; RNA (undefined);
EX [2].
EX brain,,,Theiler Stage 26;medium; RNAse protection assay; RNA (undefined);
EX [2].
EX brain,,,Theiler Stage 28;medium; RNAse protection assay; RNA (undefined);
EX [2].
EX brain,,,adult;none; RNAse protection assay; RNA (undefined); [2].
EX cochlea,,,Theiler Stage 22;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX diencephalon,,,Theiler Stage 19;high; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX dorsal root ganglion,,,Theiler Stage 17;high; RNA-in situ hybridization
EX (not further specified); RNA (undefined); [2].
EX dorsal root ganglion,,,Theiler Stage 19;medium; RNA-in situ hybridization
EX (not further specified); RNA (undefined); [2].
EX ear,,,Theiler Stage 19;high; RNA-in situ hybridization (not further
EX specified); RNA (undefined); [2].
EX eye and related structures (right and left),,,Theiler Stage 19;medium;
EX RNA-in situ hybridization (not further specified); RNA (undefined); [2].
EX facio-acoustic complex [VII VIII],,,Theiler Stage 19;detectable; RNA-in
EX situ hybridization (not further specified); RNA (undefined); [2].
EX first pharyngeal arch,,,Theiler Stage 19;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX fourth pharyngeal arch,,,Theiler Stage 19;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX head mesenchyme,,,Theiler Stage 19;medium; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX hypothalamus,,,Theiler Stage 22;high; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX hypothalamus,,,Theiler Stage 23;high; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX internal ear,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX intramural ganglia of stomach,,,Theiler Stage 22;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX intramural ganglia of the oesophagus,,,Theiler Stage 22;detectable; RNA-in
EX situ hybridization (not further specified); RNA (undefined); [2].
EX mammillary area,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX mammillary area,,,Theiler Stage 24;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX mesencephalon,,,Theiler Stage 19;high; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX mesencephalon,,,Theiler Stage 22;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX mesencephalon,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX mesencephalon,,,Theiler Stage 23;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX mesencephalon,,,Theiler Stage 24;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX mouse, Mus musculus,,,Theiler Stage 12;none; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX myelencephalon,,,Theiler Stage 19;detectable; RNA-in situ hybridization
EX (not further specified); RNA (undefined); [2].
EX myelencephalon,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX myelencephalon,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (not further specified); RNA (undefined); [2].
EX neural crest of otocyst,,,Theiler Stage 14;low; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX neural crest of otocyst,,,Theiler Stage 15;high; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX neural crest of otocyst,,,Theiler Stage 17;detectable; RNA-in situ
EX hybridization (non-radioactive); RNA (undefined); [1].
EX neural crest of otocyst,,,Theiler Stage 17;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX neural crest of otocyst,,,Theiler Stage 18;detectable; RNA-in situ
EX hybridization (non-radioactive); RNA (undefined); [1].
EX neural crest of otocyst,,,Theiler Stage 19;detectable; RNA-in situ
EX hybridization (non-radioactive); RNA (undefined); [1].
EX neural retinal epithelium,,,Theiler Stage 19;low; RNA-in situ hybridization
EX (not further specified); RNA (undefined); [2].
EX neural tube,,,Theiler Stage 19;medium; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX optic cup,,,Theiler Stage 17;low; RNA-in situ hybridization (not further
EX specified); RNA (undefined); [2].
EX optic cup,,,Theiler Stage 19;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX otic placode,,,Theiler Stage 13;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX pharyngeal arches,,,Theiler Stage 13;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX pharyngeal arches,,,Theiler Stage 18;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX pharyngeal cleft of first pharyngeal arch,,,Theiler Stage 14;high; RNA-in
EX situ hybridization (non-radioactive); RNA (undefined); [1].
EX pons,,,Theiler Stage 22;detectable; RNA-in situ hybridization (not further
EX specified); RNA (undefined); [2].
EX pons,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX pons,,,Theiler Stage 23;detectable; RNA-in situ hybridization (not further
EX specified); RNA (undefined); [2].
EX pons,,,Theiler Stage 24;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX preoptic area,,,Theiler Stage 23;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX preoptic area,,,Theiler Stage 24;detectable; RNA-in situ hybridization
EX (non-radioactive); RNA (undefined); [1].
EX second pharyngeal arch,,,Theiler Stage 19;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX spinal cord,,,Theiler Stage 17;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX subthalamus,,,Theiler Stage 22;high; RNA-in situ hybridization (not further
EX specified); RNA (undefined); [2].
EX subthalamus,,,Theiler Stage 23;high; RNA-in situ hybridization (not further
EX specified); RNA (undefined); [2].
EX third pharyngeal arch,,,Theiler Stage 19;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX tongue,,,Theiler Stage 22;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX tongue,,,Theiler Stage 23;detectable; RNA-in situ hybridization (not
EX further specified); RNA (undefined); [2].
EX trigeminal ganglion [V],,,Theiler Stage 19;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX trigeminal ganglion [V],,,Theiler Stage 23;detectable; RNA-in situ
EX hybridization (not further specified); RNA (undefined); [2].
EX wall of atrium,,,Theiler Stage 22;detectable; RNA-in situ hybridization
EX (not further specified); RNA (undefined); [2].
XX
FF probably involved in cell type specification of neuronal cells [2] [1];
FF involved in development of the inner ear [2];
FF important role in vestibular sensory organ development and maternal
FF reproduction [4];
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RN [1]; RE0016066.
RX MEDLINE; 96081377.
RA Rinkwitz-Brandt S., Justus M., Oldenettel I., Arnold H. H., Bober E.
RT Distinct temporal expression of mouse Nkx-5.1 and Nkx-5.2 homeobox genes
RT during brain and ear development
RL Mech. Dev. 52:371-381 (1995).
RN [2]; RE0016077.
RX MEDLINE; 94170918.
RA Bober E., Baum C., Braun T., Arnold H. H.
RT A novel NK-related mouse homeobox gene: expression in central and
RT peripheral nervous structures during embryonic development
RL Dev. Biol. 162:288-303 (1994).
RN [3]; RE0016078.
RX MEDLINE; 99223479.
RA Amendt B. A., Sutherland L. B., Russo A. F.
RT Transcriptional antagonism between Hmx1 and Nkx2.5 for a shared DNA-binding
RT site
RL J. Biol. Chem. 274:11635-11642 (1999).
RN [4]; RE0016068.
RX MEDLINE; 98167889.
RA Wang W., Van De Water T., Lufkin T.
RT Inner ear and maternal reproductive defects in mice lacking the Hmx3
RT homeobox gene
RL Development 125:621-634 (1998).
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Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
Downloadgrp|xml|map
Genes

43 genes, 43 accessions (Toggle view)

AccessionGeneTitleLinks
PTPRTPTPRTprotein tyrosine phosphatase, receptor type, TSource|GeneCards
PHF12PHF12PHD finger protein 12Source|GeneCards
TRERF1TRERF1transcriptional regulating factor 1Source|GeneCards
ATOH1ATOH1atonal homolog 1 (Drosophila)Source|GeneCards
JUNBJUNBjun B proto-oncogeneSource|GeneCards
SLC25A3SLC25A3solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3Source|GeneCards
LRRK1LRRK1Leucine-rich repeat kinase 1Source|GeneCards
SLITRK1SLITRK1SLIT and NTRK-like family, member 1Source|GeneCards
AMPHAMPHamphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen)Source|GeneCards
TRRAPTRRAPtransformation/transcription domain-associated proteinSource|GeneCards
PTDSRPTDSRphosphatidylserine receptorSource|GeneCards
MGC41816ANKRD39ankyrin repeat domain 39Source|GeneCards
IRX4IRX4iroquois homeobox protein 4Source|GeneCards
PBX1PBX1pre-B-cell leukemia transcription factor 1Source|GeneCards
CBLN1CBLN1cerebellin 1 precursorSource|GeneCards
C14ORF162C14ORF162chromosome 14 open reading frame 162Source|GeneCards
TNPO2TNPO2transportin 2 (importin 3, karyopherin beta 2b)Source|GeneCards
SLC20A1SLC20A1solute carrier family 20 (phosphate transporter), member 1Source|GeneCards
FGF12FGF12fibroblast growth factor 12Source|GeneCards
FLJ31528FLJ31528hypothetical protein FLJ31528Source|GeneCards
CACNB2CACNB2calcium channel, voltage-dependent, beta 2 subunitSource|GeneCards
KIAA1318RGAG1retrotransposon gag domain containing 1Source|GeneCards
SMAD2SMAD2SMAD, mothers against DPP homolog 2 (Drosophila)Source|GeneCards
DAAM2DAAM2dishevelled associated activator of morphogenesis 2Source|GeneCards
EIF3S9EIF3S9eukaryotic translation initiation factor 3, subunit 9 eta, 116kDaSource|GeneCards
KCNN1KCNN1potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1Source|GeneCards
EP300EP300E1A binding protein p300Source|GeneCards
ACIN1ACIN1apoptotic chromatin condensation inducer 1Source|GeneCards
LOC134548LOC134548hypothetical protein LOC134548Source|GeneCards
SLC25A28SLC25A28solute carrier family 25, member 28Source|GeneCards
C14ORF119C14ORF119chromosome 14 open reading frame 119Source|GeneCards
GGPS1GGPS1geranylgeranyl diphosphate synthase 1Source|GeneCards
DAZAP1DAZAP1DAZ associated protein 1Source|GeneCards
KCNB2KCNB2potassium voltage-gated channel, Shab-related subfamily, member 2Source|GeneCards
OMGOMGoligodendrocyte myelin glycoproteinSource|GeneCards
R3HDMR3HDMR3H domain (binds single-stranded nucleic acids) containingSource|GeneCards
LHFPL1LHFPL1lipoma HMGIC fusion partner-like 1Source|GeneCards
NKX2-2NKX2-2NK2 transcription factor related, locus 2 (Drosophila)Source|GeneCards
KREMEN2KREMEN2kringle containing transmembrane protein 2Source|GeneCards
ID1ID1inhibitor of DNA binding 1, dominant negative helix-loop-helix proteinSource|GeneCards
SMAD3SMAD3SMAD, mothers against DPP homolog 3 (Drosophila)Source|GeneCards
BCL2L2BCL2L2BCL2-like 2Source|GeneCards
ARID4BARID4BAT rich interactive domain 4B (RBP1- like) /// AT rich interactive domain 4B (RBP1- like)Source|GeneCards


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