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Gene set: V$PAX3_B (C3:TFAC:0187)
Standard nameV$PAX3_B
Systematic nameC3:TFAC:0187
Brief descriptionGenes with 3'UTR containing motif NNNNNNCGTCACGSTYNNNNN which matches annotation for PAX3: paired box gene 3 (Waardenburg syndrome 1)
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract

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FA Pax-3
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SY HuP2 (human); PAX3; mPax-3; mPax3.
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OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia;
OC eutheria; rodentia; myomorpha; muridae; murinae
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CL C0018; paired-homeo; 3.2.1.0.2.
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SZ 479 AA; 53.0 kDa (cDNA), 56 kDa (SDS) [20]
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SC SwissProt #P24610
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FT 1 90 transcription inhibiting region [14].
FT 34 159 paired domain.
FT 34 159 PF00292; PAX.
FT 34 159 SM00351; PAX.
FT 219 278 homeo domain.
FT 219 281 SM00389; HOX.
FT 220 276 PF00046; homeobox.
FT 291 478 proline-/serine-/threonine-rich region (79/188).
FT 402 479 transcription activating region [14].
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SF independent DNA-binding by paired and homeo domain contacting ATTA and
SF GTTCC motifs, resp. [12];
SF variable spacing of the subsites [13];
SF paired domain induces conformational change in the DNA [12];
SF homodimerization upon DNA-binding through residues between paired and homeo
SF domain [12];
SF altered DNA-binding or homodimerization in Splotch mutants [12];
SF Kr value to the binding domain (e5) of the CD19 promoter=1.3EXP4 [9];
SF mutation in paired domain (Splotch) reduces binding by factor 17 and can
SF also reduce homeodomain binding activity (factor 21) [9];
SF interaction with HIRA by the use of the homeodomain [2];
SF interaction with pRB-family proteins (pRB, p107, p130) mediated by helix I
SF and helix II of the homeodomain [3];
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CP 8.5-d embryos: mitotic cells in the ventricular zone of developing spinal
CP chord; some regions in hindbrain, midbrain, diencephalon; 10-12-d embryos:
CP neural crest of developing spinal ganglia, cranofacial mesectoderm, limb
CP mesenchyme (10-11 d) [20]
CN differentiated neuronal cells [1]
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FF activator (fused to GAL4-DNA binding domain) [14];
FF mutations may cause Splotch (pigmentation abnormalities in iris and hair,
FF eye displacement, exencephaly, spina bifida, lack of limb musculature) [21]
FF [19], e. g. G42R [12] or point mutation causing aberrant splicing [17];
FF expression is detected between embryonic day 8.5 and 14.5 [20] [15] [16];
FF absence of Sonic hedgehog (Shh) blocks expression of Pax-3/7 [4];
FF Pax-3 maintains neural progenitor cells undifferentiated [1];
FF interaction with pRB-family proteins (pRB, p107, p130) causes repression of
FF transcription [3];
FF inhibition of the myogenic differentiation in cultered myoblast cells
FF (C2C12 cells) [8];
FF necessary for migration but not differentiation of limb muscle precursors
FF [6];
FF stimulation of c-met expression during limb muscle development [7] [5];
FF may play a critical role as a repressor in the place-dependent expression
FF of Ng-CAM (neuron-glia cell adhesion molecule) in the nervous system [11];
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IN T02956; HIRA; mouse, Mus musculus.
IN T02971; p107; mouse, Mus musculus.
IN T01608; p130; human, Homo sapiens.
IN T02972; p130; mouse, Mus musculus.
IN T00680; Pax-3; mouse, Mus musculus.
IN T01423; pRb; mouse, Mus musculus.
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RN [1]; RE0014025.
RX MEDLINE; 98133329.
RA Reeves F. C., Fredericks W. J., Rauscher F. J. 3rd, Lillycrop K. A.
RT The DNA binding activity of the paired box transcription factor Pax-3 is
RT rapidly downregulated during neuronal cell differentiation
RL FEBS Lett. 422:118-122 (1998).
RN [2]; RE0014075.
RX MEDLINE; 98400262.
RA Magnaghi P., Roberts C., Lorain S., Lipinski M., Scambler P. J.
RT HIRA, a mammalian homologue of Saccharomyces cerevisiae transcriptional
RT co-repressors, interacts with Pax3
RL Nat. Genet. 20:74-77 (1998).
RN [3]; RE0014085.
RX MEDLINE; 98124188.
RA Wiggan O., Taniguchi-Sidle A., Hamel P. A.
RT Interaction of the pRB-family proteins with factors containing paired-like
RT homeodomains
RL Oncogene 16:227-236 (1998).
RN [4]; RE0006702.
RX MEDLINE; 97083577.
RA Ericson J., Morton S., Kawakami A., Roelink H., Jessell T. M.
RT Two critical periods of Sonic Hedgehog signaling required for the
RT specification of motor neuron identity
RL Cell 87:661-673 (1996).
RN [5]; RE0007031.
RX MEDLINE; 96210620.
RA Epstein J. A., Shapiro D. N., Cheng J., Lam P. Y. P., Maas R. L.
RT Pax3 modulates expression of the c-Met receptor during limb muscle
RT development.
RL Proc. Natl. Acad. Sci. USA 93:4213-4218 (1996).
RN [6]; RE0014110.
RX MEDLINE; 96194059.
RA Daston G., Lamar E., Olivier M., Goulding M.
RT Pax-3 is necessary for migration but not differentiation of limb muscle
RT precursors in the mouse
RL Development 122:1017-1027 (1996).
RN [7]; RE0014112.
RX MEDLINE; 96281660.
RA Yang X. M., Vogan K., Gros P., Park M.
RT Expression of the met receptor tyrosine kinase in muscle progenitor cells
RT in somites and limbs is absent in Splotch mice
RL Development 122:2163-2171 (1996).
RN [8]; RE0004248.
RX MEDLINE; 95263503.
RA Epstein J. A., Lam P., Jepeal L., Maas R. L., Shapiro D. N.
RT Pax3 inhibits myogenic differentiation of cultured myoblast cells
RL J. Biol. Chem. 270:11719-11722 (1995).
RN [9]; RE0010761.
RX MEDLINE; 95249539.
RA Underhill D. A., Vogan K. J., Gros P.
RT Analysis of the mouse Splotch-delayed mutation indicates that the Pax-3
RT paired domain can influence homeodomain DNA-binding activity
RL Proc. Natl. Acad. Sci. USA 92:3692-3696 (1995).
RN [10]; RE0014013.
RX MEDLINE; 96032355.
RA Chalepakis G., Gruss P.
RT Identification of DNA recognition sequences for the Pax3 paired domain
RL Gene 162:267-270 (1995).
RN [11]; RE0015185.
RX MEDLINE; 95403367.
RA Kallunki P., Jenkinson S., Edelman G. M., Jones F. S.
RT Silencer elements modulate the expression of the gene for the neuron-glia
RT cell adhesion molecule, Ng-CAM
RL J. Biol. Chem. 270:21291-21298 (1995).
RN [12]; RE0004245.
RX MEDLINE; 94224806.
RA Chalepakis G., Goulding M., Read A., Strachan T., Gruss P.
RT Molecular basis of splotch and Waardenburg Pax-3 mutations
RL Proc. Natl. Acad. Sci. USA 91:3685-3689 (1994).
RN [13]; RE0004246.
RX MEDLINE; 94344776.
RA Chalepakis G., Wijnholds J., Gruss P.
RT Pax-3 - DNA interaction: flexibility in the DNA binding and induction of
RT DNA conformational changes by paired domains
RL Nucleic Acids Res. 22:3131-3137 (1994).
RN [14]; RE0004247.
RX MEDLINE; 95108035.
RA Chalepakis G., Jones F. S., Edelman G. M., Gruss P.
RT Pax-3 contains domains for transcription activation and transcription
RT inhibition
RL Proc. Natl. Acad. Sci. USA 91:12745-12749 (1994).
RN [15]; RE0004249.
RX MEDLINE; 94215499.
RA Bober E., Franz T., Arnold H. H., Gruss P., Tremblay P.
RT Pax-3 is required for the development of limb muscles: a possible role for
RT the migration of dermomyotomal muscle progenitor cells
RL Development 120:603-612 (1994).
RN [16]; RE0004250.
RX MEDLINE; 95324381.
RA Goulding M., Lumsden A., Paquette A. J.
RT Regulation of Pax-3 expression in the dermomyotome and its role in muscle
RT development
RL Development 120:957-971 (1994).
RN [17]; RE0004215.
RX MEDLINE; 93133822.
RA Epstein D. J., Vogan K. J., Trasler D. G., Gros P.
RT A mutation within intron 3 of the Pax-3 gene produces aberrantly spliced
RT mRNA transcripts in the splotch (Sp) mouse mutant
RL Proc. Natl. Acad. Sci. USA 90:532-536 (1993).
RN [18]; RE0004244.
RX MEDLINE; 93285106.
RA Maulbecker C. C., Gruss P.
RT The oncogenic potential of Pax genes
RL EMBO J. 12:2361-2367 (1993).
RN [19]; RE0004254.
RX MEDLINE; 94010930.
RA Vogan K. J., Epstein D. J., Trasler D. G., Gros P.
RT The splotch-delayed (Spd) mouse mutant carries a point mutation within the
RT paired box of the Pax-3 gene
RL Genomics 17:364-369 (1993).
RN [20]; RE0002795.
RX MEDLINE; 91216108.
RA Goulding M. D., Chalepakis G., Deutsch U., Erselius J. R., Gruss P.
RT Pax-3, a novel murine DNA binding protein expressed during early
RT neurogenesis
RL EMBO J. 10:1135-1147 (1991).
RN [21]; RE0004253.
RX MEDLINE; 92034997.
RA Epstein D. J., Vekemans M., Gros P.
RT Splotch (Sp2H), a mutation affecting development of the mouse neural tube,
RT shows a deletion within the paired homeodomain of Pax-3
RL Cell 67:767-774 (1991).
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Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
Downloadgrp|xml|map
Genes

91 genes, 91 accessions (Toggle view)

AccessionGeneTitleLinks
RPS8RPS8ribosomal protein S8Source|GeneCards
RAB7RAB7RAB7, member RAS oncogene familySource|GeneCards
DKFZP434B168C1ORF73chromosome 1 open reading frame 73Source|GeneCards
ONECUT2ONECUT2one cut domain, family member 2Source|GeneCards
IRX6IRX6iroquois homeobox protein 6Source|GeneCards
ZPBP2ZPBP2zona pellucida binding protein 2Source|GeneCards
BCL11BBCL11BB-cell CLL/lymphoma 11B (zinc finger protein)Source|GeneCards
LRP8LRP8low density lipoprotein receptor-related protein 8, apolipoprotein e receptorSource|GeneCards
PURAPURApurine-rich element binding protein ASource|GeneCards
HOXC6HOXC6homeo box C6Source|GeneCards
ZFHX1BZFHX1Bzinc finger homeobox 1bSource|GeneCards
FBLN5FBLN5fibulin 5Source|GeneCards
LOC283514LOC283514similar to seven in absentia 2Source|GeneCards
IL24IL24Interleukin 24Source|GeneCards
CANXCANXcalnexinSource|GeneCards
GEMGEMGTP binding protein overexpressed in skeletal muscleSource|GeneCards
SHC3SHC3src homology 2 domain containing transforming protein C3Source|GeneCards
ELAVL2ELAVL2ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)Source|GeneCards
L3MBTL2L3MBTL2l(3)mbt-like 2 (Drosophila)Source|GeneCards
ELOVL5ELOVL5ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)Source|GeneCards
TRIM8TRIM8tripartite motif-containing 8Source|GeneCards
PTMAPTMAprothymosin, alpha (gene sequence 28)Source|GeneCards
FLJ37266FLJ37266hypothetical protein FLJ37266Source|GeneCards
ZNF262ZNF262zinc finger protein 262Source|GeneCards
CX36CX36connexin-36Source|GeneCards
DKK2DKK2dickkopf homolog 2 (Xenopus laevis)Source|GeneCards
PLEKHE1PLEKHE1pleckstrin homology domain containing, family E (with leucine rich repeats) member 1Source|GeneCards
RANBP6RANBP6RAN binding protein 6Source|GeneCards
BAZ1ABAZ1Abromodomain adjacent to zinc finger domain, 1ASource|GeneCards
ZHX2ZHX2transcription factor ZHX2Source|GeneCards
PNRC1PNRC1proline-rich nuclear receptor coactivator 1Source|GeneCards
PPP1R10PPP1R10protein phosphatase 1, regulatory subunit 10Source|GeneCards
KLF14KLF14Kruppel-like factor 14Source|GeneCards
ZNF521ZNF521zinc finger protein 521Source|GeneCards
MITFMITFmicrophthalmia-associated transcription factorSource|GeneCards
NPAS2NPAS2neuronal PAS domain protein 2Source|GeneCards
LAG3LAG3lymphocyte-activation gene 3Source|GeneCards
IGSF1IGSF1immunoglobulin superfamily, member 1Source|GeneCards
FLJ35409FLJ35409FLJ35409 proteinSource|GeneCards
PRO1855PRO1855hypothetical protein PRO1855Source|GeneCards
RPL27ARPL27Aribosomal protein L27aSource|GeneCards
BHLHB2BHLHB2basic helix-loop-helix domain containing, class B, 2Source|GeneCards
CENTG1CENTG1centaurin, gamma 1Source|GeneCards
JUNBJUNBjun B proto-oncogeneSource|GeneCards
MRPS18BMRPS18Bmitochondrial ribosomal protein S18BSource|GeneCards
RBJRBJRas-associated protein Rap1Source|GeneCards
SOX10SOX10SRY (sex determining region Y)-box 10Source|GeneCards
HIVEP1HIVEP1human immunodeficiency virus type I enhancer binding protein 1Source|GeneCards
LOC285498LOC285498hypothetical protein LOC285498Source|GeneCards
BZW2BZW2basic leucine zipper and W2 domains 2Source|GeneCards
FLJ25476FLJ25476FLJ25476 proteinSource|GeneCards
BAT2BAT2HLA-B associated transcript 2Source|GeneCards
DNCL1DNCL1dynein, cytoplasmic, light polypeptide 1Source|GeneCards
NDEL1NDEL1nudE nuclear distribution gene E homolog like 1 (A. nidulans)Source|GeneCards
KIAA1318RGAG1retrotransposon gag domain containing 1Source|GeneCards
INHAINHAinhibin, alphaSource|GeneCards
NR4A1NR4A1nuclear receptor subfamily 4, group A, member 1Source|GeneCards
HNRPDHNRPDheterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)Source|GeneCards
TBX3TBX3T-box 3 (ulnar mammary syndrome)Source|GeneCards
FLJ90119FLJ90119hypothetical protein FLJ90119Source|GeneCards
BARHL1BARHL1BarH-like 1 (Drosophila)Source|GeneCards
HOXC4HOXC4homeo box C4Source|GeneCards
ACVR2ACVR2activin A receptor, type IISource|GeneCards
EIF5AEIF5Aeukaryotic translation initiation factor 5ASource|GeneCards
FLJ45187FLJ45187FLJ45187 proteinSource|GeneCards
SEMA3ASEMA3Asema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3ASource|GeneCards
XPO1XPO1exportin 1 (CRM1 homolog, yeast)Source|GeneCards
GKGKGlycerol kinaseSource|GeneCards
ANKMY2ANKMY2ankyrin repeat and MYND domain containing 2Source|GeneCards
PRDM12PRDM12PR domain containing 12Source|GeneCards
CNNM2CNNM2cyclin M2Source|GeneCards
BRAFBRAFv-raf murine sarcoma viral oncogene homolog B1Source|GeneCards
BMI1PCGF4polycomb group ring finger 4Source|GeneCards
KLF2KLF2Kruppel-like factor 2 (lung)Source|GeneCards
NR4A3NR4A3nuclear receptor subfamily 4, group A, member 3Source|GeneCards
AP2B1AP2B1adaptor-related protein complex 2, beta 1 subunitSource|GeneCards
NNTNNTnicotinamide nucleotide transhydrogenaseSource|GeneCards
ZNF6ZNF6zinc finger protein 6 (CMPX1)Source|GeneCards
RAMPZNF198zinc finger protein 198Source|GeneCards
PROSCPROSCproline synthetase co-transcribed homolog (bacterial)Source|GeneCards
DLL1DLL1delta-like 1 (Drosophila)Source|GeneCards
PLEC1PLEC1plectin 1, intermediate filament binding protein 500kDaSource|GeneCards
E4F1E4F1E4F transcription factor 1Source|GeneCards
BTBD3BTBD3BTB (POZ) domain containing 3Source|GeneCards
PVRL1PVRL1poliovirus receptor-related 1 (herpesvirus entry mediator C; nectin)Source|GeneCards
TEAD3TEAD3TEA domain family member 3Source|GeneCards
TNFAIP8TNFAIP8tumor necrosis factor, alpha-induced protein 8Source|GeneCards
FLJ10871FLJ10871hypothetical protein FLJ10871Source|GeneCards
ELK1ELK1ELK1, member of ETS oncogene familySource|GeneCards
IGSF4IGSF4immunoglobulin superfamily, member 4Source|GeneCards
FEZLZNF312zinc finger protein 312Source|GeneCards


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