broad logo

Gene set: V$CDP_01 (C3:TFAC:0054)
Standard nameV$CDP_01
Systematic nameC3:TFAC:0054
Brief descriptionGenes with 3'UTR containing motif CCAATAATCGAT which matches annotation for CUTL1: cut-like 1, CCAAT displacement protein (Drosophila)
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract

Toggle abstract view

XX
XX
XX
FA CUTL1
XX
SY CDP; CCAAT displacement protein; cut homeodomain protein; Cux; cut-like
SY homeodomain protein; Clox.
XX
OS human, Homo sapiens
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia;
OC eutheria; primates
XX
XX
HO cut (Drosophila)
XX
CL C0006; homeo; 3.1.1.4.1.
XX
SZ 1505 AA; 164.4 kDa (cDNA), 180-200 kDa (SDS)
XX
XX
SC SwissProt #P39880
XX
FT 542 629 PF02376; CUT.
FT 551 610 Cut-repeat 1 (CR1).
FT 551 610 involved in binding to S/MAR-binding factor SATB1
FT [1].
FT 632 653 missing in putative splice variant.
FT 934 1021 PF02376; CUT.
FT 943 1007 Cut-repeat 2 (CR2).
FT 943 1007 involved in binding to S/MAR-binding factor SATB1
FT [1].
FT 1117 1204 PF02376; CUT.
FT 1135 1190 Cut-repeat 3 (CR3).
FT 1244 1306 SM00389; HOX.
FT 1245 1301 homeo domain.
FT 1245 1301 involved in binding to S/MAR-binding factor SATB1
FT [1].
FT 1245 1301 PF00046; homeobox.
XX
SF the Clox homolog is a splice variant [5];
SF the 3 cut repeats also contribute to DNA-binding, each individual repeat
SF and each combination exhibiting slightly different DNA-binding specificity
SF [4] [2] [5];
SF CR1 exhibits the most restricted resognition pattern [4];
SF KD (CR3-homeo domain) = 0.03 nM, isolated CR3 at least 100-fold lower
SF affinity [2];
XX
FF repressor [13] [12] [9] [8] [6] [3];
FF may regulate S/MAR-binding factor SATB1 and may be regulated by
FF it via protein-protein interaction [1];
XX
XX
XX
XX
RN [1]; RE0015021.
RX MEDLINE; 99303784.
RA Liu J., Barnett A., Neufeld E. J., Dudley J. P.
RT Homeoproteins CDP and SATB1interact: potential for tissue-specific
RT regulation
RL Mol. Cell. Biol. 19:4918-4926 (1999).
RN [2]; RE0002973.
RX MEDLINE; 95097984.
RA Harada R., Berube G., Tamplin O. J., Denis-Larose C., Nepveu A.
RT DNA-binding specificity of the cut repeats from the human cut-like protein
RL Mol. Cell. Biol. 15:129-140 (1995).
RN [3]; RE0003999.
RX MEDLINE; 95279415.
RA Lievens P. M., Donady J. J., Tufarelli C., Neufeld E. J.
RT Repressor activity of CCAAT displacement protein in HL-60 myeloid leukemia
RT cells
RL J. Biol. Chem. 270:12745-12750 (1995).
RN [4]; RE0002967.
RX MEDLINE; 94329595.
RA Aufiero B., Neufeld E. J., Orkin S. H.
RT Sequence-specific DNA binding of individual cut repeats of the human CCAAT
RT displacement/ cut homeodomain protein
RL Proc. Natl. Acad. Sci. USA 91:7757-7761 (1994).
RN [5]; RE0002972.
RX MEDLINE; 94131277.
RA Andres V., Chiara M. D., Mahdavi V.
RT A new bipartite DNA-binding domain: cooperative interaction between the cut
RT repeat and homeo domain of the cut homeo proteins
RL Genes Dev. 8:245-257 (1994).
RN [6]; RE0003358.
RX MEDLINE; 94254882.
RA Dufort D., Nepveu A.
RT The human Cut homeodomain protein represses transcription from the c-myc
RT promoter
RL Mol. Cell. Biol. 14:4251-4257 (1994).
RN [7]; RE0005004.
RX MEDLINE; 94124559.
RA Harada R., Dufort D., Denis-Larose C., Nepveu A.
RT Conserved cut repeats in the human cut homeodomain protein function as DNA
RT binding domains
RL J. Biol. Chem. 269:2062-2067 (1994).
RN [8]; RE0005002.
RX MEDLINE; 93250973.
RA Neufeld E. J., Skalnik D. G., Lievens P. M., Orkin S. H.
RT Human CCAAT dis-placement protein is homologous to the Drosophila
RT homeoprotein, cut
RL Nat. Genet. 1:50-55 (1992).
RN [9]; RE0001031.
RX MEDLINE; 91358470.
RA Skalnik D. G., Strauss E. C., Orkin S. H.
RT CCAAT displacement protein as a repressor of the myelomonocytic-specific
RT gp91-phox gene promoter
RL J. Biol. Chem. 266:16736-16744 (1991).
RN [10]; RE0002047.
RX MEDLINE; 89385992.
RA Mantovani R., Superti-Furga G., Gilman J., Ottolenghi S.
RT The deletion of the distal CCAAT box region of the Agamma-globin gene in
RT black HPFH abolishes the binding of the erythroid specific protein NFE3 and
RT of the CCAAT displacement protein
RL Nucleic Acids Res. 17:6681-6691 (1989).
RN [11]; RE0005005.
RX MEDLINE; 89150259.
RA Superti-Furga G., Barberis A., Schaffner G., Busslinger M.
RT The protein CDP, but not CP1, footprints on the CCAAT region of the
RT g-globin gene in unfractionated B-cell extracts
RL Biochim. Biophys. Acta 1007:237-242 (1989).
RN [12]; RE0000346.
RX MEDLINE; 89030605.
RA Superti-Furga G., Barberis A., Schaffner G., Busslinger M.
RT The -117 mutation in Greek HPFH affects the binding of three nuclear
RT factors to the CCAAT region of the gamma-globin gene
RL EMBO J. 7:3099-3107 (1988).
RN [13]; RE0000079.
RX MEDLINE; 87273497.
RA Barberis A., Superti-Furga G., Busslinger M.
RT Mutually Exclusive Interaction of the CCAAT-Binding Factor and of a
RT Displacement Protein with Overlapping Sequences of a Histone Gene Promoter
RL Cell 50:347-359 (1987).
XX
Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
Downloadgrp|xml|map
Genes

96 genes, 96 accessions (Toggle view)

AccessionGeneTitleLinks
SIAT7ESIAT7Esialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) ESource|GeneCards
MN1MN1meningioma (disrupted in balanced translocation) 1Source|GeneCards
CUGBP2CUGBP2CUG triplet repeat, RNA binding protein 2Source|GeneCards
EDEM1EDEM1ER degradation enhancer, mannosidase alpha-like 1Source|GeneCards
PHCAPHCAphytoceramidase, alkalineSource|GeneCards
HTR4HTR45-hydroxytryptamine (serotonin) receptor 4Source|GeneCards
SLC17A6SLC17A6solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6Source|GeneCards
ZNF238ZNF238zinc finger protein 238Source|GeneCards
FLJ26443FLJ26443FLJ26443 proteinSource|GeneCards
RREB1RREB1ras responsive element binding protein 1Source|GeneCards
MEIS1MEIS1Meis1, myeloid ecotropic viral integration site 1 homolog (mouse)Source|GeneCards
TMSL1TMSL1thymosin-like 1Source|GeneCards
REREREREarginine-glutamic acid dipeptide (RE) repeatsSource|GeneCards
IRX4IRX4iroquois homeobox protein 4Source|GeneCards
CASTCASTcalpastatinSource|GeneCards
CIB3CIB3calcium and integrin binding family member 3Source|GeneCards
HOXC6HOXC6homeo box C6Source|GeneCards
EGR1EGR1early growth response 1Source|GeneCards
STMN4STMN4stathmin-like 4Source|GeneCards
ME3ME3malic enzyme 3, NADP(+)-dependent, mitochondrialSource|GeneCards
FGF12FGF12fibroblast growth factor 12Source|GeneCards
C9ORF39C9ORF39chromosome 9 open reading frame 39Source|GeneCards
AFPAFPAlpha-fetoproteinSource|GeneCards
NEUROD6NEUROD6neurogenic differentiation 6Source|GeneCards
MYO1BMYO1Bmyosin IBSource|GeneCards
LOC283514LOC283514similar to seven in absentia 2Source|GeneCards
TAC1TAC1tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma)Source|GeneCards
HS3ST3A1HS3ST3A1heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1Source|GeneCards
KIAA1747LOC57795hypothetical protein from clone 24828Source|GeneCards
EBF2EBF2early B-cell factor 2Source|GeneCards
PTMAPTMAprothymosin, alpha (gene sequence 28)Source|GeneCards
CEAL1CEACAM19carcinoembryonic antigen-related cell adhesion molecule 19Source|GeneCards
SCRT2SCRT2scratch homolog 2, zinc finger protein (Drosophila)Source|GeneCards
DD5EDD1E3 ubiquitin protein ligase, HECT domain containing, 1Source|GeneCards
LOC138046LOC138046hypothetical protein LOC138046Source|GeneCards
LOC56901LOC56901NADH:ubiquinone oxidoreductase MLRQ subunit homologSource|GeneCards
PIPOXPIPOXpipecolic acid oxidaseSource|GeneCards
PHC2PHC2polyhomeotic-like 2 (Drosophila)Source|GeneCards
HICMDFICMyoD family inhibitor domain containingSource|GeneCards
NKX2-2NKX2-2NK2 transcription factor related, locus 2 (Drosophila)Source|GeneCards
LOC51057LOC51057hypothetical protein LOC51057Source|GeneCards
BAZ1ABAZ1Abromodomain adjacent to zinc finger domain, 1ASource|GeneCards
DESR1ZCSL2Zinc finger, CSL domain containing 2Source|GeneCards
SULF2SULF2sulfatase 2Source|GeneCards
HGNT-IV-HHGNT-IV-HUDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IV-homologSource|GeneCards
TP73LTP73Ltumor protein p73-likeSource|GeneCards
KLF14KLF14Kruppel-like factor 14Source|GeneCards
MITFMITFmicrophthalmia-associated transcription factorSource|GeneCards
FOXF2FOXF2forkhead box F2Source|GeneCards
FYNFYNFYN oncogene related to SRC, FGR, YESSource|GeneCards
HBXAPHBXAPhepatitis B virus x associated proteinSource|GeneCards
ATP6V1B2ATP6V1B2ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B, isoform 2Source|GeneCards
CHD2CHD2chromodomain helicase DNA binding protein 2Source|GeneCards
TMSL3TMSL3thymosin-like 3Source|GeneCards
HOXA3HOXA3homeo box A3Source|GeneCards
SLICKKCNT2potassium channel, subfamily T, member 2Source|GeneCards
TMSL4TMSL4thymosin-like 4Source|GeneCards
CSF2CSF2colony stimulating factor 2 (granulocyte-macrophage)Source|GeneCards
FLJ46154FLJ46154FLJ46154 proteinSource|GeneCards
CASKIN1CASKIN1CASK interacting protein 1Source|GeneCards
OTPOTPorthopedia homolog (Drosophila)Source|GeneCards
MGC15763MGC15763hypothetical protein BC008322Source|GeneCards
CCND1CCND1cyclin D1 (PRAD1: parathyroid adenomatosis 1)Source|GeneCards
GCGCGroup-specific component (vitamin D binding protein)Source|GeneCards
HERC4HERC4hect domain and RLD 4Source|GeneCards
CDK11CDC2L6cell division cycle 2-like 6 (CDK8-like)Source|GeneCards
FLJ39075FLJ39075hypothetical protein FLJ39075Source|GeneCards
GABRA6GABRA6gamma-aminobutyric acid (GABA) A receptor, alpha 6Source|GeneCards
SKB1SKB1SKB1 homolog (S. pombe)Source|GeneCards
HOXC4HOXC4homeo box C4Source|GeneCards
MGC40178MGC40178hypothetical protein MGC40178Source|GeneCards
MGC52019SLC5A12Solute carrier family 5 (sodium/glucose cotransporter), member 12Source|GeneCards
CALCRCALCRcalcitonin receptorSource|GeneCards
SVILSVILsupervillinSource|GeneCards
ADAM11ADAM11a disintegrin and metalloproteinase domain 11Source|GeneCards
PRDM12PRDM12PR domain containing 12Source|GeneCards
HOXB8HOXB8homeo box B8Source|GeneCards
ALBALBalbuminSource|GeneCards
TTRTTRtransthyretin (prealbumin, amyloidosis type I)Source|GeneCards
SOATSLC10A6solute carrier family 10 (sodium/bile acid cotransporter family), member 6Source|GeneCards
PPP2R5DPPP2R5Dprotein phosphatase 2, regulatory subunit B (B56), delta isoformSource|GeneCards
CACNA2D3CACNA2D3calcium channel, voltage-dependent, alpha 2/delta 3 subunitSource|GeneCards
FOXA2FOXA2forkhead box A2Source|GeneCards
LOC345667LOC345667similar to ADAMTS-10 precursor (A disintegrin and metalloproteinase with thrombospondin motifs 10) (ADAM-TS 10) (ADAM-TS10)Source|GeneCards
HOXA9HOXA9homeo box A9Source|GeneCards
TMSL6TMSL6thymosin-like 6Source|GeneCards
NFIXNFIXnuclear factor I/X (CCAAT-binding transcription factor)Source|GeneCards
THPOTHPOthrombopoietin (myeloproliferative leukemia virus oncogene ligand, megakaryocyte growth and development factor)Source|GeneCards
SMOC1SMOC1SPARC related modular calcium binding 1Source|GeneCards
POU2F1POU2F1POU domain, class 2, transcription factor 1Source|GeneCards
FLJ39743FLJ39743hypothetical protein FLJ39743Source|GeneCards
TAF15TAF15TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDaSource|GeneCards
STMN2STMN2stathmin-like 2Source|GeneCards
FGF13FGF13fibroblast growth factor 13Source|GeneCards
ESRRGESRRGestrogen-related receptor gammaSource|GeneCards
PTD015PTD015PTD015 proteinSource|GeneCards