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Gene set: V$HOX13_01 (C3:TFAC:0010)
Standard nameV$HOX13_01
Systematic nameC3:TFAC:0010
Brief descriptionGenes with 3'UTR containing motif TGCNHNCWYCCYCATTAKTNNDCNMNHYCN which matches annotation for HOXA5: homeo box A5
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract

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XX
XX
XX
FA HOXA5
XX
SY Hox-1.3; Hoxa-5; Chox-1.3 (chick).
XX
OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia;
OC eutheria; rodentia; myomorpha; muridae; murinae
XX
XX
HO Scr (Drosophila)
XX
CL C0006; homeo; 3.1.1.2.16.
XX
SZ 270 AA; 29.2 kDa (cDNA)
XX
XX
FT 176 181 Antp-type hexapeptide.
FT 195 254 homeo domain.
FT 195 257 SM00389; HOX.
FT 196 252 PF00046; homeobox.
XX
SF phosphorylation [7];
SF moderate affinity to homeo domain consensus sequence (KD = 5 nM) [3];
SF a cis-regulatory region of 604 bp directs expression from cervical metamere
SF 3 to thoracic metamere 2 (C3-T2) in the branchial spinal cord [1];
XX
CP (embryo 12.5 days:) CNS caudal to a boundary in the posterior
CP myelencephalon, lung (low), dorsal parts of the mantle layer, oesophagus,
CP trachea, stomach, posterior gut, mesonephric/metanephric kidney, testis [6]
XX
FF mutation causes homeotic transformations in cervical and thoracic regions
FF [4];
FF the 7th cervical vertebra adopts thoracic-like features including the
FF presence of a pair of ribs [4];
FF also expressed in certain kidney substructures [2] [9];
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RN [1]; RE0014483.
RX MEDLINE; 99177148.
RA Nowling T., Zhou W., Krieger K. E., Larochelle C., Nguyen-Huu M. C.,
RA Jeannotte L., Tuggle C. K.
RT Hoxa5 gene regulation: A gradient of binding activity to a brachial spinal
RT cord element
RL Dev. Biol. 208:134-146 (1999).
RN [2]; RE0014517.
RA Davies J. A., Brandli A. W.
RT The Kidney Development Database; URL:
RT http://www.ana.ed.ac.uk/anatomy/database/kidbase/tranfack.html
RL Internet : (1997).
RN [3]; RE0003885.
RX MEDLINE; 94277058.
RA Pellerin I., Schnabel C., Catron K. M., Abate C.
RT Hox proteins have different affinities for a consensus DNA site that
RT correlate with the positions of their genes on the hox cluster
RL Mol. Cell. Biol. 14:4532-4545 (1994).
RN [4]; RE0003884.
RX MEDLINE; 94040731.
RA Jeannotte L., Lemieux M., Charron J., Poirier F., Robertson E. J.
RT Specification of axial identity in the mouse: role of the Hoxa-5 (Hox1.3)
RT gene
RL Genes Dev. 7:2085-2096 (1993).
RN [5]; RE0002766.
RX MEDLINE; 90220580.
RA Hirsch M.-R., Gaugler L., Deagostini-Bazin H., Bally-Cuif L., Goridis C.
RT Identification of Positive and Negative Regulatory Elements Governing
RT Cell-Type-Specific Expression of the Neural Cell Adhesion Molecule Gene
RL Mol. Cell. Biol. 10:1959-1968 (1990).
RN [6]; RE0003983.
RX MEDLINE; 90382249.
RA Gaunt S. J., Coletta P. L., Pravtcheva D., Sharpe P. T.
RT Mouse Hox-3.4: homeobox sequence and embryonic expression patterns compared
RT with other members of the Hox gene network
RL Development 109:329-339 (1990).
RN [7]; RE0000655.
RX MEDLINE; 89232713.
RA Odenwald W. F., Garbern J., Arnheiter H., Tournier-Lasserve E., Lazzarini
RA R. A.
RT The HOX-1.3 homeo box protein is a sequence-specific DNA-binding
RT phosphoprotein
RL Genes Dev. 3:158-172 (1989).
RN [8]; RE0003883.
RX MEDLINE; 88328807.
RA Fibi M., Zink B., Kessel M., Colberg-Poley A. M., Labeit S., Lehrach H.,
RA Gruss P.
RT Coding sequence and expression of the homeobox gene hox 1.3
RL Development 102:349-359 (1988).
RN [9]; RE0006757.
RX MEDLINE; 89064559.
RA Gaunt S. J.
RT Mouse homeobox gene transcripts occupy different but overlapping domains in
RT embryonic germ layers and organs: a comparison of Hox-3.1 and Hox-1.5
RL Development 103:135-144 (1988).
RN [10]; RE0003882.
RX MEDLINE; 88056292.
RA Odenwald W. F., Taylor C. F., Palmer-Hill F. J., Friedrich jr V., Tani M.,
RA Lazzarini R. A.
RT Expression of a homeo domain protein in noncontact-inhibited cultured cells
RT and postmitotic neurons
RL Genes Dev. 1:482-496 (1987).
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Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
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Genes

46 genes, 46 accessions (Toggle view)

AccessionGeneTitleLinks
NEO1NEO1neogenin homolog 1 (chicken)Source|GeneCards
UNC5CUNC5Cunc-5 homolog C (C. elegans)Source|GeneCards
LMO4LMO4LIM domain only 4Source|GeneCards
ZA20D1ZA20D1zinc finger, A20 domain containing 1Source|GeneCards
YES1YES1v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1Source|GeneCards
PCTK1PCTK1PCTAIRE protein kinase 1Source|GeneCards
NACSINEHBP1EH domain binding protein 1Source|GeneCards
HOXB5HOXB5homeo box B5Source|GeneCards
NDFIP1NDFIP1Nedd4 family interacting protein 1Source|GeneCards
GPR161GPR161G protein-coupled receptor 161Source|GeneCards
CGI-30DPH5DPH5 homolog (S. cerevisiae)Source|GeneCards
CASKIN1CASKIN1CASK interacting protein 1Source|GeneCards
PRRX1PRRX1paired related homeobox 1Source|GeneCards
TRPV6TRPV6transient receptor potential cation channel, subfamily V, member 6Source|GeneCards
CCND1CCND1cyclin D1 (PRAD1: parathyroid adenomatosis 1)Source|GeneCards
NTF3NTF3neurotrophin 3Source|GeneCards
CROC4C1ORF61chromosome 1 open reading frame 61Source|GeneCards
GSH1GSH1GS homeobox 1Source|GeneCards
TNRC6TNRC6ATrinucleotide repeat containing 6ASource|GeneCards
HOXD4HOXD4homeo box D4Source|GeneCards
EMX2EMX2empty spiracles homolog 2 (Drosophila)Source|GeneCards
PDE2APDE2Aphosphodiesterase 2A, cGMP-stimulatedSource|GeneCards
BHC80PHF21APHD finger protein 21ASource|GeneCards
ZNF485ZNF485zinc finger protein 485Source|GeneCards
MGC4268MGC4268hypothetical protein MGC4268Source|GeneCards
GNAI1GNAI1guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1Source|GeneCards
LOC51059LOC51059hypothetical protein LOC51059Source|GeneCards
TRIM8TRIM8tripartite motif-containing 8Source|GeneCards
HUMPPAHUMPPAparaneoplastic antigenSource|GeneCards
SVILSVILsupervillinSource|GeneCards
CALD1CALD1caldesmon 1Source|GeneCards
KCNH3KCNH3potassium voltage-gated channel, subfamily H (eag-related), member 3Source|GeneCards
UNC5BUNC5Bunc-5 homolog B (C. elegans)Source|GeneCards
HIST1H2ACHIST1H2AChistone 1, H2acSource|GeneCards
PPP2R2BPPP2R2Bprotein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoformSource|GeneCards
TFAP2BL1TFAP2Dtranscription factor AP-2 delta (activating enhancer binding protein 2 delta)Source|GeneCards
IGF1IGF1insulin-like growth factor 1 (somatomedin C)Source|GeneCards
FBXO11FBXO11F-box only protein 11Source|GeneCards
FLJ44313FLJ44313FLJ44313 proteinSource|GeneCards
LOC124402LOC124402LOC124402Source|GeneCards
FOXA1FOXA1forkhead box A1Source|GeneCards
COLEC10COLEC10collectin sub-family member 10 (C-type lectin)Source|GeneCards
SONSONSON DNA binding proteinSource|GeneCards
SMOC1SMOC1SPARC related modular calcium binding 1Source|GeneCards
SYNPO2LSYNPO2Lsynaptopodin 2-likeSource|GeneCards
FEZLZNF312zinc finger protein 312Source|GeneCards