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Gene set: V$PAX3_01 (C3:TFAC:0197)
Standard nameV$PAX3_01
Systematic nameC3:TFAC:0197
Brief descriptionGenes with 3'UTR containing motif TCGTCACRCTTHM which matches annotation for PAX3: paired box gene 3 (Waardenburg syndrome 1)
CategoryC3: Motif
Sub-categoryTFAC: Transfac
Full description or Abstract

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FA Pax-3
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SY HuP2 (human); PAX3; mPax-3; mPax3.
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OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia;
OC eutheria; rodentia; myomorpha; muridae; murinae
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CL C0018; paired-homeo; 3.2.1.0.2.
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SZ 479 AA; 53.0 kDa (cDNA), 56 kDa (SDS) [20]
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SC SwissProt #P24610
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FT 1 90 transcription inhibiting region [14].
FT 34 159 paired domain.
FT 34 159 PF00292; PAX.
FT 34 159 SM00351; PAX.
FT 219 278 homeo domain.
FT 219 281 SM00389; HOX.
FT 220 276 PF00046; homeobox.
FT 291 478 proline-/serine-/threonine-rich region (79/188).
FT 402 479 transcription activating region [14].
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SF independent DNA-binding by paired and homeo domain contacting ATTA and
SF GTTCC motifs, resp. [12];
SF variable spacing of the subsites [13];
SF paired domain induces conformational change in the DNA [12];
SF homodimerization upon DNA-binding through residues between paired and homeo
SF domain [12];
SF altered DNA-binding or homodimerization in Splotch mutants [12];
SF Kr value to the binding domain (e5) of the CD19 promoter=1.3EXP4 [9];
SF mutation in paired domain (Splotch) reduces binding by factor 17 and can
SF also reduce homeodomain binding activity (factor 21) [9];
SF interaction with HIRA by the use of the homeodomain [2];
SF interaction with pRB-family proteins (pRB, p107, p130) mediated by helix I
SF and helix II of the homeodomain [3];
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CP 8.5-d embryos: mitotic cells in the ventricular zone of developing spinal
CP chord; some regions in hindbrain, midbrain, diencephalon; 10-12-d embryos:
CP neural crest of developing spinal ganglia, cranofacial mesectoderm, limb
CP mesenchyme (10-11 d) [20]
CN differentiated neuronal cells [1]
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FF activator (fused to GAL4-DNA binding domain) [14];
FF mutations may cause Splotch (pigmentation abnormalities in iris and hair,
FF eye displacement, exencephaly, spina bifida, lack of limb musculature) [21]
FF [19], e. g. G42R [12] or point mutation causing aberrant splicing [17];
FF expression is detected between embryonic day 8.5 and 14.5 [20] [15] [16];
FF absence of Sonic hedgehog (Shh) blocks expression of Pax-3/7 [4];
FF Pax-3 maintains neural progenitor cells undifferentiated [1];
FF interaction with pRB-family proteins (pRB, p107, p130) causes repression of
FF transcription [3];
FF inhibition of the myogenic differentiation in cultered myoblast cells
FF (C2C12 cells) [8];
FF necessary for migration but not differentiation of limb muscle precursors
FF [6];
FF stimulation of c-met expression during limb muscle development [7] [5];
FF may play a critical role as a repressor in the place-dependent expression
FF of Ng-CAM (neuron-glia cell adhesion molecule) in the nervous system [11];
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IN T02956; HIRA; mouse, Mus musculus.
IN T02971; p107; mouse, Mus musculus.
IN T01608; p130; human, Homo sapiens.
IN T02972; p130; mouse, Mus musculus.
IN T00680; Pax-3; mouse, Mus musculus.
IN T01423; pRb; mouse, Mus musculus.
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RN [1]; RE0014025.
RX MEDLINE; 98133329.
RA Reeves F. C., Fredericks W. J., Rauscher F. J. 3rd, Lillycrop K. A.
RT The DNA binding activity of the paired box transcription factor Pax-3 is
RT rapidly downregulated during neuronal cell differentiation
RL FEBS Lett. 422:118-122 (1998).
RN [2]; RE0014075.
RX MEDLINE; 98400262.
RA Magnaghi P., Roberts C., Lorain S., Lipinski M., Scambler P. J.
RT HIRA, a mammalian homologue of Saccharomyces cerevisiae transcriptional
RT co-repressors, interacts with Pax3
RL Nat. Genet. 20:74-77 (1998).
RN [3]; RE0014085.
RX MEDLINE; 98124188.
RA Wiggan O., Taniguchi-Sidle A., Hamel P. A.
RT Interaction of the pRB-family proteins with factors containing paired-like
RT homeodomains
RL Oncogene 16:227-236 (1998).
RN [4]; RE0006702.
RX MEDLINE; 97083577.
RA Ericson J., Morton S., Kawakami A., Roelink H., Jessell T. M.
RT Two critical periods of Sonic Hedgehog signaling required for the
RT specification of motor neuron identity
RL Cell 87:661-673 (1996).
RN [5]; RE0007031.
RX MEDLINE; 96210620.
RA Epstein J. A., Shapiro D. N., Cheng J., Lam P. Y. P., Maas R. L.
RT Pax3 modulates expression of the c-Met receptor during limb muscle
RT development.
RL Proc. Natl. Acad. Sci. USA 93:4213-4218 (1996).
RN [6]; RE0014110.
RX MEDLINE; 96194059.
RA Daston G., Lamar E., Olivier M., Goulding M.
RT Pax-3 is necessary for migration but not differentiation of limb muscle
RT precursors in the mouse
RL Development 122:1017-1027 (1996).
RN [7]; RE0014112.
RX MEDLINE; 96281660.
RA Yang X. M., Vogan K., Gros P., Park M.
RT Expression of the met receptor tyrosine kinase in muscle progenitor cells
RT in somites and limbs is absent in Splotch mice
RL Development 122:2163-2171 (1996).
RN [8]; RE0004248.
RX MEDLINE; 95263503.
RA Epstein J. A., Lam P., Jepeal L., Maas R. L., Shapiro D. N.
RT Pax3 inhibits myogenic differentiation of cultured myoblast cells
RL J. Biol. Chem. 270:11719-11722 (1995).
RN [9]; RE0010761.
RX MEDLINE; 95249539.
RA Underhill D. A., Vogan K. J., Gros P.
RT Analysis of the mouse Splotch-delayed mutation indicates that the Pax-3
RT paired domain can influence homeodomain DNA-binding activity
RL Proc. Natl. Acad. Sci. USA 92:3692-3696 (1995).
RN [10]; RE0014013.
RX MEDLINE; 96032355.
RA Chalepakis G., Gruss P.
RT Identification of DNA recognition sequences for the Pax3 paired domain
RL Gene 162:267-270 (1995).
RN [11]; RE0015185.
RX MEDLINE; 95403367.
RA Kallunki P., Jenkinson S., Edelman G. M., Jones F. S.
RT Silencer elements modulate the expression of the gene for the neuron-glia
RT cell adhesion molecule, Ng-CAM
RL J. Biol. Chem. 270:21291-21298 (1995).
RN [12]; RE0004245.
RX MEDLINE; 94224806.
RA Chalepakis G., Goulding M., Read A., Strachan T., Gruss P.
RT Molecular basis of splotch and Waardenburg Pax-3 mutations
RL Proc. Natl. Acad. Sci. USA 91:3685-3689 (1994).
RN [13]; RE0004246.
RX MEDLINE; 94344776.
RA Chalepakis G., Wijnholds J., Gruss P.
RT Pax-3 - DNA interaction: flexibility in the DNA binding and induction of
RT DNA conformational changes by paired domains
RL Nucleic Acids Res. 22:3131-3137 (1994).
RN [14]; RE0004247.
RX MEDLINE; 95108035.
RA Chalepakis G., Jones F. S., Edelman G. M., Gruss P.
RT Pax-3 contains domains for transcription activation and transcription
RT inhibition
RL Proc. Natl. Acad. Sci. USA 91:12745-12749 (1994).
RN [15]; RE0004249.
RX MEDLINE; 94215499.
RA Bober E., Franz T., Arnold H. H., Gruss P., Tremblay P.
RT Pax-3 is required for the development of limb muscles: a possible role for
RT the migration of dermomyotomal muscle progenitor cells
RL Development 120:603-612 (1994).
RN [16]; RE0004250.
RX MEDLINE; 95324381.
RA Goulding M., Lumsden A., Paquette A. J.
RT Regulation of Pax-3 expression in the dermomyotome and its role in muscle
RT development
RL Development 120:957-971 (1994).
RN [17]; RE0004215.
RX MEDLINE; 93133822.
RA Epstein D. J., Vogan K. J., Trasler D. G., Gros P.
RT A mutation within intron 3 of the Pax-3 gene produces aberrantly spliced
RT mRNA transcripts in the splotch (Sp) mouse mutant
RL Proc. Natl. Acad. Sci. USA 90:532-536 (1993).
RN [18]; RE0004244.
RX MEDLINE; 93285106.
RA Maulbecker C. C., Gruss P.
RT The oncogenic potential of Pax genes
RL EMBO J. 12:2361-2367 (1993).
RN [19]; RE0004254.
RX MEDLINE; 94010930.
RA Vogan K. J., Epstein D. J., Trasler D. G., Gros P.
RT The splotch-delayed (Spd) mouse mutant carries a point mutation within the
RT paired box of the Pax-3 gene
RL Genomics 17:364-369 (1993).
RN [20]; RE0002795.
RX MEDLINE; 91216108.
RA Goulding M. D., Chalepakis G., Deutsch U., Erselius J. R., Gruss P.
RT Pax-3, a novel murine DNA binding protein expressed during early
RT neurogenesis
RL EMBO J. 10:1135-1147 (1991).
RN [21]; RE0004253.
RX MEDLINE; 92034997.
RA Epstein D. J., Vekemans M., Gros P.
RT Splotch (Sp2H), a mutation affecting development of the mouse neural tube,
RT shows a deletion within the paired homeodomain of Pax-3
RL Cell 67:767-774 (1991).
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Publication URLna
External linksna
Keywords & MeSH headingsna
OrganismHuman,Mouse,Rat,Dog
Contributed byBroad Institute
Source platformSeq_Accession
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Genes

22 genes, 22 accessions (Toggle view)

AccessionGeneTitleLinks
CACNA1GCACNA1Gcalcium channel, voltage-dependent, alpha 1G subunitSource|GeneCards
FGF10FGF10fibroblast growth factor 10Source|GeneCards
MAP1AMAP1Amicrotubule-associated protein 1ASource|GeneCards
C20ORF112C20ORF112chromosome 20 open reading frame 112Source|GeneCards
CBX8CBX8chromobox homolog 8 (Pc class homolog, Drosophila)Source|GeneCards
KIAA0252RTF1Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)Source|GeneCards
NOTCH2NOTCH2Notch homolog 2 (Drosophila)Source|GeneCards
SFRS6SFRS6splicing factor, arginine/serine-rich 6Source|GeneCards
LOC112885LOC112885hypothetical protein BC012187Source|GeneCards
YARSYARStyrosyl-tRNA synthetaseSource|GeneCards
AP1S1AP1S1adaptor-related protein complex 1, sigma 1 subunitSource|GeneCards
KCNE4KCNE4potassium voltage-gated channel, Isk-related family, member 4Source|GeneCards
E2IG5E2IG5growth and transformation-dependent proteinSource|GeneCards
N2NNOTCH2NLNotch homolog 2 (Drosophila) N-terminal likeSource|GeneCards
FBXO11FBXO11F-box only protein 11Source|GeneCards
MYH2MYH2myosin, heavy polypeptide 2, skeletal muscle, adultSource|GeneCards
FLJ31579PLCXD2Phosphatidylinositol-specific phospholipase C, X domain containing 2Source|GeneCards
ZIC1ZIC1Zic family member 1 (odd-paired homolog, Drosophila)Source|GeneCards
LOC170261LOC170261hypothetical protein LOC170261Source|GeneCards
STXBP1STXBP1syntaxin binding protein 1Source|GeneCards
CLPTM1CLPTM1cleft lip and palate associated transmembrane protein 1Source|GeneCards
CRY1CRY1cryptochrome 1 (photolyase-like)Source|GeneCards