STA 293B: Gene Expression Analysis: Technology, Computation & Analysis





Home Topics Computing Data sets Notes Project Refs & links


Class-by-class schedule

Location: Most classes will be in 025 Old Chemistry, but a couple of demos etc will be in 208 and/or 389 CARL (in Genetics Department)




Date Place Topic
2/27 025 OC Introduction
3/1 025 OC Strategies for expression analysis (Hollie's slides)
3/6 208 CARL Expression analysis methods and tools
3/8 308 CARL More methods and tools, commercial software
3/13 Spring break: no class
3/15 Spring break: no class
3/20 025 OC Basic analysis and statistics for expression data
Correlation, graphical data exploration, intro to regression
Use of Matlab
3/22 025 OC Regression and statistical models
Relationships between expression levels of genes; networks
3/27 025 OC Perspectives on clustering and discrimination
3/29 025 OC More on regression modelling: multiple regression
Predictive relationships
4/3 025 OC Principal components and singular value/factor methods
4/5 025 OC Binary regressions for molecular phenotyping
4/10 025 OC More on binary regressions for molecular phenotyping, and applications in cancer
4/17 Project time
4/19 Project time
5/1 Final date to hand in project